miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22568 5' -53.1 NC_005091.1 + 44619 0.66 0.884952
Target:  5'- uGAUCgagGCGAgGUC-UUCGGCCUUGCc- -3'
miRNA:   3'- -CUAG---CGCUgCAGcAAGUUGGAGCGcc -5'
22568 5' -53.1 NC_005091.1 + 24581 0.66 0.884952
Target:  5'- cGAUCgggGCGGCGUCGUUgCAaggcgcgcGCCcugUCGaCGGa -3'
miRNA:   3'- -CUAG---CGCUGCAGCAA-GU--------UGG---AGC-GCC- -5'
22568 5' -53.1 NC_005091.1 + 30215 0.66 0.877429
Target:  5'- --cCGgGGCGUC-UUCGACCUCGaCa- -3'
miRNA:   3'- cuaGCgCUGCAGcAAGUUGGAGC-Gcc -5'
22568 5' -53.1 NC_005091.1 + 1749 0.66 0.869657
Target:  5'- cGUCGCGACGg---UCGACCUCa--- -3'
miRNA:   3'- cUAGCGCUGCagcaAGUUGGAGcgcc -5'
22568 5' -53.1 NC_005091.1 + 24534 0.66 0.869657
Target:  5'- gGGUcCGCGAUGUCGUaCAAgC-CGcCGGa -3'
miRNA:   3'- -CUA-GCGCUGCAGCAaGUUgGaGC-GCC- -5'
22568 5' -53.1 NC_005091.1 + 39128 0.66 0.86164
Target:  5'- -cUCGCGccACGucUCGUUCAAgCUCG-GGa -3'
miRNA:   3'- cuAGCGC--UGC--AGCAAGUUgGAGCgCC- -5'
22568 5' -53.1 NC_005091.1 + 35513 0.66 0.853387
Target:  5'- gGGUCGCcACGUCGgUCAAgCguaaugagUCGUGGg -3'
miRNA:   3'- -CUAGCGcUGCAGCaAGUUgG--------AGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 25322 0.66 0.853387
Target:  5'- ---gGCGACGU-GaUCGGCCUCGUGc -3'
miRNA:   3'- cuagCGCUGCAgCaAGUUGGAGCGCc -5'
22568 5' -53.1 NC_005091.1 + 57769 0.67 0.836203
Target:  5'- cGUCGaCGcCGUCGUgaaggCGGCCaaGCGGc -3'
miRNA:   3'- cUAGC-GCuGCAGCAa----GUUGGagCGCC- -5'
22568 5' -53.1 NC_005091.1 + 375 0.67 0.836203
Target:  5'- cGUCGaCGcCGUCGUgaaggCGGCCaaGCGGc -3'
miRNA:   3'- cUAGC-GCuGCAGCAa----GUUGGagCGCC- -5'
22568 5' -53.1 NC_005091.1 + 26221 0.67 0.836203
Target:  5'- --aCGCGGCGgcaGcUUCGGCCUgaGCGGc -3'
miRNA:   3'- cuaGCGCUGCag-C-AAGUUGGAg-CGCC- -5'
22568 5' -53.1 NC_005091.1 + 24098 0.67 0.827289
Target:  5'- cGGUUGCGA--UCGUUCggUCUgCGUGGc -3'
miRNA:   3'- -CUAGCGCUgcAGCAAGuuGGA-GCGCC- -5'
22568 5' -53.1 NC_005091.1 + 34448 0.67 0.808862
Target:  5'- aGGUCGCGuACGgccgGUUCG-CCgCGCGGu -3'
miRNA:   3'- -CUAGCGC-UGCag--CAAGUuGGaGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 18463 0.68 0.783826
Target:  5'- gGGUCGUaguccgagcggaucaGACGcagCG-UCAGCUUCGCGGu -3'
miRNA:   3'- -CUAGCG---------------CUGCa--GCaAGUUGGAGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 14291 0.69 0.739164
Target:  5'- cGUCaCGAUG-CGUaUCGGCUUCGCGGu -3'
miRNA:   3'- cUAGcGCUGCaGCA-AGUUGGAGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 44658 0.69 0.728692
Target:  5'- uGAUCGCcuucGCGUCGUccaUCGACUUuucguccuugaCGCGGa -3'
miRNA:   3'- -CUAGCGc---UGCAGCA---AGUUGGA-----------GCGCC- -5'
22568 5' -53.1 NC_005091.1 + 43165 0.69 0.718124
Target:  5'- -cUCGCGACGagcaGUUCuucuGCuUUCGCGGg -3'
miRNA:   3'- cuAGCGCUGCag--CAAGu---UG-GAGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 42121 0.69 0.707473
Target:  5'- -uUCGCuGAUGUCGUUCuuGCCUacgaucCGUGGu -3'
miRNA:   3'- cuAGCG-CUGCAGCAAGu-UGGA------GCGCC- -5'
22568 5' -53.1 NC_005091.1 + 51063 0.7 0.664247
Target:  5'- --gCGCGcCGcuUCGaUCAacGCCUCGCGGa -3'
miRNA:   3'- cuaGCGCuGC--AGCaAGU--UGGAGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 33347 0.7 0.642414
Target:  5'- --aCGCGACGcacacaucgcaaUCacccgGUUCAACCUgCGCGGg -3'
miRNA:   3'- cuaGCGCUGC------------AG-----CAAGUUGGA-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.