miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22568 5' -53.1 NC_005091.1 + 41403 0.7 0.631478
Target:  5'- cGAUCGCGGCGUgcCGgUCGAUCUCGa-- -3'
miRNA:   3'- -CUAGCGCUGCA--GCaAGUUGGAGCgcc -5'
22568 5' -53.1 NC_005091.1 + 26113 0.71 0.609618
Target:  5'- uGAUCGCGcucgccacggcguACGUCGgcgugcagggcgcgaUUAACCUUGCGGc -3'
miRNA:   3'- -CUAGCGC-------------UGCAGCa--------------AGUUGGAGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 42048 0.73 0.50278
Target:  5'- ---gGCGACGUgcUGcUCGACCUCGCGa -3'
miRNA:   3'- cuagCGCUGCA--GCaAGUUGGAGCGCc -5'
22568 5' -53.1 NC_005091.1 + 50275 0.74 0.462261
Target:  5'- cAUUGCGGCGaUCGUcUCAGCCaucgucggcUCGCGGc -3'
miRNA:   3'- cUAGCGCUGC-AGCA-AGUUGG---------AGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 36342 0.75 0.386802
Target:  5'- cGUCGUGGCGgCGUUC-AUCUCGUGGc -3'
miRNA:   3'- cUAGCGCUGCaGCAAGuUGGAGCGCC- -5'
22568 5' -53.1 NC_005091.1 + 36802 0.83 0.127332
Target:  5'- uGAUgGCGACGgcgagcCGUUCGACCUCGCGu -3'
miRNA:   3'- -CUAgCGCUGCa-----GCAAGUUGGAGCGCc -5'
22568 5' -53.1 NC_005091.1 + 14137 0.91 0.038321
Target:  5'- aGAUCG-GcACGUCGUUCAACCUCGCGGc -3'
miRNA:   3'- -CUAGCgC-UGCAGCAAGUUGGAGCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.