miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 34513 0.72 0.414657
Target:  5'- aCGUAgcCGAcCACGcCAAGGCGGaUCaGACCg -3'
miRNA:   3'- -GCAU--GCU-GUGC-GUUCCGCCgAG-CUGG- -5'
22569 3' -55.5 NC_005091.1 + 35214 0.67 0.714192
Target:  5'- --cGCGACGCGUaccacaagcugcuGAccGGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUGCG-------------UU--CCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 38403 0.67 0.704691
Target:  5'- aGUACGcUACGagcaGCGGCUCG-CCg -3'
miRNA:   3'- gCAUGCuGUGCguucCGCCGAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 38647 0.69 0.56497
Target:  5'- --gAUGGCGCGCuucaacAGGaGCGGCuuaUCGACCu -3'
miRNA:   3'- gcaUGCUGUGCG------UUC-CGCCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 39335 0.76 0.238436
Target:  5'- gCGUaGCGACACGCA--GCGGCgCGAUCa -3'
miRNA:   3'- -GCA-UGCUGUGCGUucCGCCGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 40643 0.72 0.396481
Target:  5'- cCGUGCucGGCGCGgGAuaccgacucGGCGGCggCGACCu -3'
miRNA:   3'- -GCAUG--CUGUGCgUU---------CCGCCGa-GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 43116 0.69 0.554354
Target:  5'- --cGCGACGaGCGGGGCGauaauuuuCUCGGCCg -3'
miRNA:   3'- gcaUGCUGUgCGUUCCGCc-------GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 44134 0.66 0.746382
Target:  5'- aGUACGuCGCGCAgucugucgaauGGGCGcagucGCUucccggCGACCu -3'
miRNA:   3'- gCAUGCuGUGCGU-----------UCCGC-----CGA------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 44591 0.7 0.48207
Target:  5'- uCGUACGugGCGUcgAAGuguucCGGCUUGAUCg -3'
miRNA:   3'- -GCAUGCugUGCG--UUCc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 44655 0.71 0.433335
Target:  5'- aCGUACGACGCgGCcgagAAGGCG-CUCGAa- -3'
miRNA:   3'- -GCAUGCUGUG-CG----UUCCGCcGAGCUgg -5'
22569 3' -55.5 NC_005091.1 + 44877 0.72 0.423934
Target:  5'- aCGgGCGGCG-GCAAGGCGGC-CGAa- -3'
miRNA:   3'- -GCaUGCUGUgCGUUCCGCCGaGCUgg -5'
22569 3' -55.5 NC_005091.1 + 46437 0.73 0.342696
Target:  5'- ---uCGGCAUGCAAGGCGaucaagaaggcgacGCUCGACa -3'
miRNA:   3'- gcauGCUGUGCGUUCCGC--------------CGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 48942 0.69 0.57564
Target:  5'- gCGUGCGACgguuugAgGCGGGGCaggauuggGGCUUGGCg -3'
miRNA:   3'- -GCAUGCUG------UgCGUUCCG--------CCGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 49769 0.66 0.725717
Target:  5'- aCGgcuUGGCAUGCAGcacgcuCGGCUCGAUCg -3'
miRNA:   3'- -GCau-GCUGUGCGUUcc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 50941 0.69 0.596028
Target:  5'- gCGUcaGCGAC-CGCAAGcGCGGUgcgcacgggcaaaUCGGCa -3'
miRNA:   3'- -GCA--UGCUGuGCGUUC-CGCCG-------------AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 51003 0.69 0.56497
Target:  5'- --gGCGGCG-GUAAGGCuGGCauuaaUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGUUCCG-CCG-----AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 51550 0.67 0.661904
Target:  5'- cCGcGCGGCAuCGCcaaguGGGCGGaagcgaCGACCg -3'
miRNA:   3'- -GCaUGCUGU-GCGu----UCCGCCga----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 51579 0.66 0.7666
Target:  5'- uCGUGCGucgcgugacggGCGCGCAgaAGcGCGGCaCGGgCg -3'
miRNA:   3'- -GCAUGC-----------UGUGCGU--UC-CGCCGaGCUgG- -5'
22569 3' -55.5 NC_005091.1 + 52208 0.7 0.522889
Target:  5'- uGgcCGACACggacccgguaguGCGGGGCGGCUuUGACa -3'
miRNA:   3'- gCauGCUGUG------------CGUUCCGCCGA-GCUGg -5'
22569 3' -55.5 NC_005091.1 + 52451 0.69 0.586353
Target:  5'- --cAgGGCGCGCcGGGCGGC--GACCc -3'
miRNA:   3'- gcaUgCUGUGCGuUCCGCCGagCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.