miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 18362 0.67 0.698327
Target:  5'- gGUACGugACGaucugcucguuGCGGCUCGugUc -3'
miRNA:   3'- gCAUGCugUGCguuc-------CGCCGAGCugG- -5'
22569 3' -55.5 NC_005091.1 + 20381 0.69 0.559655
Target:  5'- aCGUACGuugcgacgaacauCGCGCAcGGCGGCUacucgcaaagcggCGACg -3'
miRNA:   3'- -GCAUGCu------------GUGCGUuCCGCCGA-------------GCUGg -5'
22569 3' -55.5 NC_005091.1 + 21639 0.66 0.745359
Target:  5'- aCGUACGACAucaugguCGCca-GCGGCUacaccccgGACCa -3'
miRNA:   3'- -GCAUGCUGU-------GCGuucCGCCGAg-------CUGG- -5'
22569 3' -55.5 NC_005091.1 + 21869 0.68 0.618684
Target:  5'- ---cCGACACGaAGGGCGucaGCUCGGCa -3'
miRNA:   3'- gcauGCUGUGCgUUCCGC---CGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 22034 0.67 0.704691
Target:  5'- uGUAuCGuCGCGUAuuggGGGUaacGCUCGACCa -3'
miRNA:   3'- gCAU-GCuGUGCGU----UCCGc--CGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 22142 0.68 0.640308
Target:  5'- -aUACGACgaucaccaucaaGCGCA--GCGGCUUGGCUg -3'
miRNA:   3'- gcAUGCUG------------UGCGUucCGCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 23500 0.69 0.597104
Target:  5'- --gGCGACGCGCGcGGCGauggcgcuGCUCGGuCUg -3'
miRNA:   3'- gcaUGCUGUGCGUuCCGC--------CGAGCU-GG- -5'
22569 3' -55.5 NC_005091.1 + 24019 0.71 0.442856
Target:  5'- -cUGCGGCgGCGaAGGGCGGuCUCGACg -3'
miRNA:   3'- gcAUGCUG-UGCgUUCCGCC-GAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 24627 0.67 0.661904
Target:  5'- ---cCGAUACGUccGGCGGCUUGuACg -3'
miRNA:   3'- gcauGCUGUGCGuuCCGCCGAGC-UGg -5'
22569 3' -55.5 NC_005091.1 + 24726 0.7 0.502299
Target:  5'- uGgcCGACAa-CAAGGCGGCguUCGACg -3'
miRNA:   3'- gCauGCUGUgcGUUCCGCCG--AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 24882 0.69 0.543797
Target:  5'- --gGCGGCcuGCGCAGcacGGCGGaauucCUCGGCCu -3'
miRNA:   3'- gcaUGCUG--UGCGUU---CCGCC-----GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 25745 0.68 0.607884
Target:  5'- uGUGCaGuACACG---GGCGGuCUCGGCCa -3'
miRNA:   3'- gCAUG-C-UGUGCguuCCGCC-GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 28268 0.79 0.160761
Target:  5'- --gGCGACGCGCu-GGCGGCUugcgUGACCu -3'
miRNA:   3'- gcaUGCUGUGCGuuCCGCCGA----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 29511 0.71 0.472105
Target:  5'- ---uCGACGCGCAAgGGCGGCgucUCGGUCg -3'
miRNA:   3'- gcauGCUGUGCGUU-CCGCCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 30086 0.66 0.725717
Target:  5'- --gACGGaccaGCGCuuuaAGGGCGGCgaagucgcCGACCa -3'
miRNA:   3'- gcaUGCUg---UGCG----UUCCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 31804 0.76 0.250894
Target:  5'- gCGUACGGCauuucgGCGCAgccgaAGGCGGC-CGGCg -3'
miRNA:   3'- -GCAUGCUG------UGCGU-----UCCGCCGaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 31874 0.66 0.756553
Target:  5'- cCGUGuCGuCGCGCucgucGGCGGCcugcUCGugCc -3'
miRNA:   3'- -GCAU-GCuGUGCGuu---CCGCCG----AGCugG- -5'
22569 3' -55.5 NC_005091.1 + 32301 0.69 0.56497
Target:  5'- cCGUugACGACGCG-AAGGUGauGCUCGcuGCCg -3'
miRNA:   3'- -GCA--UGCUGUGCgUUCCGC--CGAGC--UGG- -5'
22569 3' -55.5 NC_005091.1 + 34099 0.66 0.7361
Target:  5'- gCGUACGACGCGUugauGaCGGCguuuugaagCGACa -3'
miRNA:   3'- -GCAUGCUGUGCGuu--CcGCCGa--------GCUGg -5'
22569 3' -55.5 NC_005091.1 + 34432 0.71 0.472105
Target:  5'- gCGUGCagUACGaCAAGcGCGGC-CGGCCg -3'
miRNA:   3'- -GCAUGcuGUGC-GUUC-CGCCGaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.