miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 34513 0.72 0.414657
Target:  5'- aCGUAgcCGAcCACGcCAAGGCGGaUCaGACCg -3'
miRNA:   3'- -GCAU--GCU-GUGC-GUUCCGCCgAG-CUGG- -5'
22569 3' -55.5 NC_005091.1 + 44591 0.7 0.48207
Target:  5'- uCGUACGugGCGUcgAAGuguucCGGCUUGAUCg -3'
miRNA:   3'- -GCAUGCugUGCG--UUCc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52208 0.7 0.522889
Target:  5'- uGgcCGACACggacccgguaguGCGGGGCGGCUuUGACa -3'
miRNA:   3'- gCauGCUGUG------------CGUUCCGCCGA-GCUGg -5'
22569 3' -55.5 NC_005091.1 + 43116 0.69 0.554354
Target:  5'- --cGCGACGaGCGGGGCGauaauuuuCUCGGCCg -3'
miRNA:   3'- gcaUGCUGUgCGUUCCGCc-------GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 50941 0.69 0.596028
Target:  5'- gCGUcaGCGAC-CGCAAGcGCGGUgcgcacgggcaaaUCGGCa -3'
miRNA:   3'- -GCA--UGCUGuGCGUUC-CGCCG-------------AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 52451 0.69 0.586353
Target:  5'- --cAgGGCGCGCcGGGCGGC--GACCc -3'
miRNA:   3'- gcaUgCUGUGCGuUCCGCCGagCUGG- -5'
22569 3' -55.5 NC_005091.1 + 48942 0.69 0.57564
Target:  5'- gCGUGCGACgguuugAgGCGGGGCaggauuggGGCUUGGCg -3'
miRNA:   3'- -GCAUGCUG------UgCGUUCCG--------CCGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 8231 0.69 0.56497
Target:  5'- aCGUGCuGAU-CGCGguacuGGGCGGCgUCGGCa -3'
miRNA:   3'- -GCAUG-CUGuGCGU-----UCCGCCG-AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 51003 0.69 0.56497
Target:  5'- --gGCGGCG-GUAAGGCuGGCauuaaUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGUUCCG-CCG-----AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 38647 0.69 0.56497
Target:  5'- --gAUGGCGCGCuucaacAGGaGCGGCuuaUCGACCu -3'
miRNA:   3'- gcaUGCUGUGCG------UUC-CGCCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52733 0.67 0.708921
Target:  5'- uCGUACcucauccucgguucgGGCAuCGCuuGGGCGGCugUCGGCUu -3'
miRNA:   3'- -GCAUG---------------CUGU-GCGu-UCCGCCG--AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 35214 0.67 0.714192
Target:  5'- --cGCGACGCGUaccacaagcugcuGAccGGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUGCG-------------UU--CCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 16325 0.67 0.715244
Target:  5'- gCGaGCGGCGCaucGCAugccGGCGGcCUCGuCCc -3'
miRNA:   3'- -GCaUGCUGUG---CGUu---CCGCC-GAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 7504 0.67 0.715244
Target:  5'- --aGCGGCA-GCcgguucuucGGGCaGCUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGu--------UCCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 5098 0.66 0.725717
Target:  5'- ---uUGACACGCGuuGCGGCgcaggacgCGAUCg -3'
miRNA:   3'- gcauGCUGUGCGUucCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 21639 0.66 0.745359
Target:  5'- aCGUACGACAucaugguCGCca-GCGGCUacaccccgGACCa -3'
miRNA:   3'- -GCAUGCUGU-------GCGuucCGCCGAg-------CUGG- -5'
22569 3' -55.5 NC_005091.1 + 44134 0.66 0.746382
Target:  5'- aGUACGuCGCGCAgucugucgaauGGGCGcagucGCUucccggCGACCu -3'
miRNA:   3'- gCAUGCuGUGCGU-----------UCCGC-----CGA------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 56451 0.66 0.754528
Target:  5'- -cUGCGGCugGCGuauggggcuucuGGCGGgaCGGCa -3'
miRNA:   3'- gcAUGCUGugCGUu-----------CCGCCgaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 31874 0.66 0.756553
Target:  5'- cCGUGuCGuCGCGCucgucGGCGGCcugcUCGugCc -3'
miRNA:   3'- -GCAU-GCuGUGCGuu---CCGCCG----AGCugG- -5'
22569 3' -55.5 NC_005091.1 + 54517 0.76 0.250894
Target:  5'- aCGUcCGACACGgAAGGCGGCgaaACCc -3'
miRNA:   3'- -GCAuGCUGUGCgUUCCGCCGagcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.