Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22569 | 3' | -55.5 | NC_005091.1 | + | 38403 | 0.67 | 0.704691 |
Target: 5'- aGUACGcUACGagcaGCGGCUCG-CCg -3' miRNA: 3'- gCAUGCuGUGCguucCGCCGAGCuGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 52451 | 0.69 | 0.586353 |
Target: 5'- --cAgGGCGCGCcGGGCGGC--GACCc -3' miRNA: 3'- gcaUgCUGUGCGuUCCGCCGagCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 50941 | 0.69 | 0.596028 |
Target: 5'- gCGUcaGCGAC-CGCAAGcGCGGUgcgcacgggcaaaUCGGCa -3' miRNA: 3'- -GCA--UGCUGuGCGUUC-CGCCG-------------AGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 9869 | 0.69 | 0.597104 |
Target: 5'- cCGUACGugACGaucauccuCGAcGGCGGCUacACCg -3' miRNA: 3'- -GCAUGCugUGC--------GUU-CCGCCGAgcUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 25745 | 0.68 | 0.607884 |
Target: 5'- uGUGCaGuACACG---GGCGGuCUCGGCCa -3' miRNA: 3'- gCAUG-C-UGUGCguuCCGCC-GAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 7999 | 0.68 | 0.607884 |
Target: 5'- cCGUACGAacguguGCGCGAGGggauCGaGgUCGGCCu -3' miRNA: 3'- -GCAUGCUg-----UGCGUUCC----GC-CgAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 12368 | 0.68 | 0.618684 |
Target: 5'- --cGCGACgaGCGCGGccagugcgacGGCGGCgacuaCGGCCg -3' miRNA: 3'- gcaUGCUG--UGCGUU----------CCGCCGa----GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 11559 | 0.68 | 0.640308 |
Target: 5'- uGUAgGuuGCACGCAGGGCaucgagcuGGCgcuUCGGCUg -3' miRNA: 3'- gCAUgC--UGUGCGUUCCG--------CCG---AGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 18362 | 0.67 | 0.698327 |
Target: 5'- gGUACGugACGaucugcucguuGCGGCUCGugUc -3' miRNA: 3'- gCAUGCugUGCguuc-------CGCCGAGCugG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 48942 | 0.69 | 0.57564 |
Target: 5'- gCGUGCGACgguuugAgGCGGGGCaggauuggGGCUUGGCg -3' miRNA: 3'- -GCAUGCUG------UgCGUUCCG--------CCGAGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 8231 | 0.69 | 0.56497 |
Target: 5'- aCGUGCuGAU-CGCGguacuGGGCGGCgUCGGCa -3' miRNA: 3'- -GCAUG-CUGuGCGU-----UCCGCCG-AGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 51003 | 0.69 | 0.56497 |
Target: 5'- --gGCGGCG-GUAAGGCuGGCauuaaUCGACCa -3' miRNA: 3'- gcaUGCUGUgCGUUCCG-CCG-----AGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 39335 | 0.76 | 0.238436 |
Target: 5'- gCGUaGCGACACGCA--GCGGCgCGAUCa -3' miRNA: 3'- -GCA-UGCUGUGCGUucCGCCGaGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 46437 | 0.73 | 0.342696 |
Target: 5'- ---uCGGCAUGCAAGGCGaucaagaaggcgacGCUCGACa -3' miRNA: 3'- gcauGCUGUGCGUUCCGC--------------CGAGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 52670 | 0.72 | 0.387588 |
Target: 5'- gGUACGACACGaccagacGGGCGcGCacgcCGGCCa -3' miRNA: 3'- gCAUGCUGUGCgu-----UCCGC-CGa---GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 34513 | 0.72 | 0.414657 |
Target: 5'- aCGUAgcCGAcCACGcCAAGGCGGaUCaGACCg -3' miRNA: 3'- -GCAU--GCU-GUGC-GUUCCGCCgAG-CUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 44591 | 0.7 | 0.48207 |
Target: 5'- uCGUACGugGCGUcgAAGuguucCGGCUUGAUCg -3' miRNA: 3'- -GCAUGCugUGCG--UUCc----GCCGAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 52208 | 0.7 | 0.522889 |
Target: 5'- uGgcCGACACggacccgguaguGCGGGGCGGCUuUGACa -3' miRNA: 3'- gCauGCUGUG------------CGUUCCGCCGA-GCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 43116 | 0.69 | 0.554354 |
Target: 5'- --cGCGACGaGCGGGGCGauaauuuuCUCGGCCg -3' miRNA: 3'- gcaUGCUGUgCGUUCCGCc-------GAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 38647 | 0.69 | 0.56497 |
Target: 5'- --gAUGGCGCGCuucaacAGGaGCGGCuuaUCGACCu -3' miRNA: 3'- gcaUGCUGUGCG------UUC-CGCCG---AGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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