miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 374 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 807 0.66 0.756553
Target:  5'- uCGUGCGcuGCGCugccgcguggguGUAcGGCGGCgauccugCGGCCa -3'
miRNA:   3'- -GCAUGC--UGUG------------CGUuCCGCCGa------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 4305 0.7 0.512552
Target:  5'- aCGUACGGCACGguGacgGGCGcGC-CG-CCg -3'
miRNA:   3'- -GCAUGCUGUGCguU---CCGC-CGaGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 5098 0.66 0.725717
Target:  5'- ---uUGACACGCGuuGCGGCgcaggacgCGAUCg -3'
miRNA:   3'- gcauGCUGUGCGUucCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 7504 0.67 0.715244
Target:  5'- --aGCGGCA-GCcgguucuucGGGCaGCUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGu--------UCCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 7999 0.68 0.607884
Target:  5'- cCGUACGAacguguGCGCGAGGggauCGaGgUCGGCCu -3'
miRNA:   3'- -GCAUGCUg-----UGCGUUCC----GC-CgAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 8112 0.66 0.7666
Target:  5'- uCGaACGACAgGUAAuGCaGGC-CGACCu -3'
miRNA:   3'- -GCaUGCUGUgCGUUcCG-CCGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 8231 0.69 0.56497
Target:  5'- aCGUGCuGAU-CGCGguacuGGGCGGCgUCGGCa -3'
miRNA:   3'- -GCAUG-CUGuGCGU-----UCCGCCG-AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 9057 0.68 0.651114
Target:  5'- uGUACGACGCGCucgccGGGaaGUaaCGGCCg -3'
miRNA:   3'- gCAUGCUGUGCGu----UCCgcCGa-GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 9240 0.66 0.756553
Target:  5'- gGUGCGGCccuGCGaAGGGCGaC-CGGCCg -3'
miRNA:   3'- gCAUGCUG---UGCgUUCCGCcGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 9869 0.69 0.597104
Target:  5'- cCGUACGugACGaucauccuCGAcGGCGGCUacACCg -3'
miRNA:   3'- -GCAUGCugUGC--------GUU-CCGCCGAgcUGG- -5'
22569 3' -55.5 NC_005091.1 + 11559 0.68 0.640308
Target:  5'- uGUAgGuuGCACGCAGGGCaucgagcuGGCgcuUCGGCUg -3'
miRNA:   3'- gCAUgC--UGUGCGUUCCG--------CCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 12368 0.68 0.618684
Target:  5'- --cGCGACgaGCGCGGccagugcgacGGCGGCgacuaCGGCCg -3'
miRNA:   3'- gcaUGCUG--UGCGUU----------CCGCCGa----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 12567 0.7 0.512552
Target:  5'- -uUGCGACGCauCGAGGacaaGCUCGACCg -3'
miRNA:   3'- gcAUGCUGUGc-GUUCCgc--CGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 13067 0.68 0.651114
Target:  5'- --gGCGGCAgGCAAuacGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUgCGUUc--CGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 14086 0.67 0.682321
Target:  5'- -aUAUGugGCGCGcgaucuccggaacGGGCGGUgCGACg -3'
miRNA:   3'- gcAUGCugUGCGU-------------UCCGCCGaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 14323 1.13 0.000677
Target:  5'- gCGUACGACACGCAAGGCGGCUCGACCg -3'
miRNA:   3'- -GCAUGCUGUGCGUUCCGCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 16325 0.67 0.715244
Target:  5'- gCGaGCGGCGCaucGCAugccGGCGGcCUCGuCCc -3'
miRNA:   3'- -GCaUGCUGUG---CGUu---CCGCC-GAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 16564 0.68 0.640308
Target:  5'- aGUACG-CGCGgAAGaauucCGGCUgGGCCg -3'
miRNA:   3'- gCAUGCuGUGCgUUCc----GCCGAgCUGG- -5'
22569 3' -55.5 NC_005091.1 + 18300 0.69 0.543797
Target:  5'- --cGCGAUGCGCGuGGCGauGCgCGACCu -3'
miRNA:   3'- gcaUGCUGUGCGUuCCGC--CGaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.