miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 14323 1.13 0.000677
Target:  5'- gCGUACGACACGCAAGGCGGCUCGACCg -3'
miRNA:   3'- -GCAUGCUGUGCGUUCCGCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 28268 0.79 0.160761
Target:  5'- --gGCGACGCGCu-GGCGGCUugcgUGACCu -3'
miRNA:   3'- gcaUGCUGUGCGuuCCGCCGA----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 39335 0.76 0.238436
Target:  5'- gCGUaGCGACACGCA--GCGGCgCGAUCa -3'
miRNA:   3'- -GCA-UGCUGUGCGUucCGCCGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 31804 0.76 0.250894
Target:  5'- gCGUACGGCauuucgGCGCAgccgaAGGCGGC-CGGCg -3'
miRNA:   3'- -GCAUGCUG------UGCGU-----UCCGCCGaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 54517 0.76 0.250894
Target:  5'- aCGUcCGACACGgAAGGCGGCgaaACCc -3'
miRNA:   3'- -GCAuGCUGUGCgUUCCGCCGagcUGG- -5'
22569 3' -55.5 NC_005091.1 + 46437 0.73 0.342696
Target:  5'- ---uCGGCAUGCAAGGCGaucaagaaggcgacGCUCGACa -3'
miRNA:   3'- gcauGCUGUGCGUUCCGC--------------CGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 52670 0.72 0.387588
Target:  5'- gGUACGACACGaccagacGGGCGcGCacgcCGGCCa -3'
miRNA:   3'- gCAUGCUGUGCgu-----UCCGC-CGa---GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 40643 0.72 0.396481
Target:  5'- cCGUGCucGGCGCGgGAuaccgacucGGCGGCggCGACCu -3'
miRNA:   3'- -GCAUG--CUGUGCgUU---------CCGCCGa-GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 34513 0.72 0.414657
Target:  5'- aCGUAgcCGAcCACGcCAAGGCGGaUCaGACCg -3'
miRNA:   3'- -GCAU--GCU-GUGC-GUUCCGCCgAG-CUGG- -5'
22569 3' -55.5 NC_005091.1 + 54409 0.72 0.423934
Target:  5'- aCGgACGACauGCGCGAaGC-GCUCGACCa -3'
miRNA:   3'- -GCaUGCUG--UGCGUUcCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 44877 0.72 0.423934
Target:  5'- aCGgGCGGCG-GCAAGGCGGC-CGAa- -3'
miRNA:   3'- -GCaUGCUGUgCGUUCCGCCGaGCUgg -5'
22569 3' -55.5 NC_005091.1 + 44655 0.71 0.433335
Target:  5'- aCGUACGACGCgGCcgagAAGGCG-CUCGAa- -3'
miRNA:   3'- -GCAUGCUGUG-CG----UUCCGCcGAGCUgg -5'
22569 3' -55.5 NC_005091.1 + 24019 0.71 0.442856
Target:  5'- -cUGCGGCgGCGaAGGGCGGuCUCGACg -3'
miRNA:   3'- gcAUGCUG-UGCgUUCCGCC-GAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 29511 0.71 0.472105
Target:  5'- ---uCGACGCGCAAgGGCGGCgucUCGGUCg -3'
miRNA:   3'- gcauGCUGUGCGUU-CCGCCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 34432 0.71 0.472105
Target:  5'- gCGUGCagUACGaCAAGcGCGGC-CGGCCg -3'
miRNA:   3'- -GCAUGcuGUGC-GUUC-CGCCGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 44591 0.7 0.48207
Target:  5'- uCGUACGugGCGUcgAAGuguucCGGCUUGAUCg -3'
miRNA:   3'- -GCAUGCugUGCG--UUCc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 24726 0.7 0.502299
Target:  5'- uGgcCGACAa-CAAGGCGGCguUCGACg -3'
miRNA:   3'- gCauGCUGUgcGUUCCGCCG--AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 4305 0.7 0.512552
Target:  5'- aCGUACGGCACGguGacgGGCGcGC-CG-CCg -3'
miRNA:   3'- -GCAUGCUGUGCguU---CCGC-CGaGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 12567 0.7 0.512552
Target:  5'- -uUGCGACGCauCGAGGacaaGCUCGACCg -3'
miRNA:   3'- gcAUGCUGUGc-GUUCCgc--CGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 55397 0.7 0.521852
Target:  5'- --cGCGAgCACGC-GGGCGGCaaagcugUCGAUCu -3'
miRNA:   3'- gcaUGCU-GUGCGuUCCGCCG-------AGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.