miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 52208 0.7 0.522889
Target:  5'- uGgcCGACACggacccgguaguGCGGGGCGGCUuUGACa -3'
miRNA:   3'- gCauGCUGUG------------CGUUCCGCCGA-GCUGg -5'
22569 3' -55.5 NC_005091.1 + 18300 0.69 0.543797
Target:  5'- --cGCGAUGCGCGuGGCGauGCgCGACCu -3'
miRNA:   3'- gcaUGCUGUGCGUuCCGC--CGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 24882 0.69 0.543797
Target:  5'- --gGCGGCcuGCGCAGcacGGCGGaauucCUCGGCCu -3'
miRNA:   3'- gcaUGCUG--UGCGUU---CCGCC-----GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 43116 0.69 0.554354
Target:  5'- --cGCGACGaGCGGGGCGauaauuuuCUCGGCCg -3'
miRNA:   3'- gcaUGCUGUgCGUUCCGCc-------GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 20381 0.69 0.559655
Target:  5'- aCGUACGuugcgacgaacauCGCGCAcGGCGGCUacucgcaaagcggCGACg -3'
miRNA:   3'- -GCAUGCu------------GUGCGUuCCGCCGA-------------GCUGg -5'
22569 3' -55.5 NC_005091.1 + 8231 0.69 0.56497
Target:  5'- aCGUGCuGAU-CGCGguacuGGGCGGCgUCGGCa -3'
miRNA:   3'- -GCAUG-CUGuGCGU-----UCCGCCG-AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 51003 0.69 0.56497
Target:  5'- --gGCGGCG-GUAAGGCuGGCauuaaUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGUUCCG-CCG-----AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 32301 0.69 0.56497
Target:  5'- cCGUugACGACGCG-AAGGUGauGCUCGcuGCCg -3'
miRNA:   3'- -GCA--UGCUGUGCgUUCCGC--CGAGC--UGG- -5'
22569 3' -55.5 NC_005091.1 + 38647 0.69 0.56497
Target:  5'- --gAUGGCGCGCuucaacAGGaGCGGCuuaUCGACCu -3'
miRNA:   3'- gcaUGCUGUGCG------UUC-CGCCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 48942 0.69 0.57564
Target:  5'- gCGUGCGACgguuugAgGCGGGGCaggauuggGGCUUGGCg -3'
miRNA:   3'- -GCAUGCUG------UgCGUUCCG--------CCGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 52451 0.69 0.586353
Target:  5'- --cAgGGCGCGCcGGGCGGC--GACCc -3'
miRNA:   3'- gcaUgCUGUGCGuUCCGCCGagCUGG- -5'
22569 3' -55.5 NC_005091.1 + 50941 0.69 0.596028
Target:  5'- gCGUcaGCGAC-CGCAAGcGCGGUgcgcacgggcaaaUCGGCa -3'
miRNA:   3'- -GCA--UGCUGuGCGUUC-CGCCG-------------AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 23500 0.69 0.597104
Target:  5'- --gGCGACGCGCGcGGCGauggcgcuGCUCGGuCUg -3'
miRNA:   3'- gcaUGCUGUGCGUuCCGC--------CGAGCU-GG- -5'
22569 3' -55.5 NC_005091.1 + 9869 0.69 0.597104
Target:  5'- cCGUACGugACGaucauccuCGAcGGCGGCUacACCg -3'
miRNA:   3'- -GCAUGCugUGC--------GUU-CCGCCGAgcUGG- -5'
22569 3' -55.5 NC_005091.1 + 25745 0.68 0.607884
Target:  5'- uGUGCaGuACACG---GGCGGuCUCGGCCa -3'
miRNA:   3'- gCAUG-C-UGUGCguuCCGCC-GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 7999 0.68 0.607884
Target:  5'- cCGUACGAacguguGCGCGAGGggauCGaGgUCGGCCu -3'
miRNA:   3'- -GCAUGCUg-----UGCGUUCC----GC-CgAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 21869 0.68 0.618684
Target:  5'- ---cCGACACGaAGGGCGucaGCUCGGCa -3'
miRNA:   3'- gcauGCUGUGCgUUCCGC---CGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 12368 0.68 0.618684
Target:  5'- --cGCGACgaGCGCGGccagugcgacGGCGGCgacuaCGGCCg -3'
miRNA:   3'- gcaUGCUG--UGCGUU----------CCGCCGa----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 55210 0.68 0.629495
Target:  5'- --cGCGGCccguGCGCGGGGgucCGGCUCGGuucCCg -3'
miRNA:   3'- gcaUGCUG----UGCGUUCC---GCCGAGCU---GG- -5'
22569 3' -55.5 NC_005091.1 + 22142 0.68 0.640308
Target:  5'- -aUACGACgaucaccaucaaGCGCA--GCGGCUUGGCUg -3'
miRNA:   3'- gcAUGCUG------------UGCGUucCGCCGAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.