miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 57768 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 56451 0.66 0.754528
Target:  5'- -cUGCGGCugGCGuauggggcuucuGGCGGgaCGGCa -3'
miRNA:   3'- gcAUGCUGugCGUu-----------CCGCCgaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 55582 0.66 0.724673
Target:  5'- --cGCGGucCACGCGcucgugcAGGCGGCgaUCGGCg -3'
miRNA:   3'- gcaUGCU--GUGCGU-------UCCGCCG--AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 55397 0.7 0.521852
Target:  5'- --cGCGAgCACGC-GGGCGGCaaagcugUCGAUCu -3'
miRNA:   3'- gcaUGCU-GUGCGuUCCGCCG-------AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 55210 0.68 0.629495
Target:  5'- --cGCGGCccguGCGCGGGGgucCGGCUCGGuucCCg -3'
miRNA:   3'- gcaUGCUG----UGCGUUCC---GCCGAGCU---GG- -5'
22569 3' -55.5 NC_005091.1 + 54517 0.76 0.250894
Target:  5'- aCGUcCGACACGgAAGGCGGCgaaACCc -3'
miRNA:   3'- -GCAuGCUGUGCgUUCCGCCGagcUGG- -5'
22569 3' -55.5 NC_005091.1 + 54409 0.72 0.423934
Target:  5'- aCGgACGACauGCGCGAaGC-GCUCGACCa -3'
miRNA:   3'- -GCaUGCUG--UGCGUUcCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52733 0.67 0.708921
Target:  5'- uCGUACcucauccucgguucgGGCAuCGCuuGGGCGGCugUCGGCUu -3'
miRNA:   3'- -GCAUG---------------CUGU-GCGu-UCCGCCG--AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52670 0.72 0.387588
Target:  5'- gGUACGACACGaccagacGGGCGcGCacgcCGGCCa -3'
miRNA:   3'- gCAUGCUGUGCgu-----UCCGC-CGa---GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52451 0.69 0.586353
Target:  5'- --cAgGGCGCGCcGGGCGGC--GACCc -3'
miRNA:   3'- gcaUgCUGUGCGuUCCGCCGagCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52208 0.7 0.522889
Target:  5'- uGgcCGACACggacccgguaguGCGGGGCGGCUuUGACa -3'
miRNA:   3'- gCauGCUGUG------------CGUUCCGCCGA-GCUGg -5'
22569 3' -55.5 NC_005091.1 + 51579 0.66 0.7666
Target:  5'- uCGUGCGucgcgugacggGCGCGCAgaAGcGCGGCaCGGgCg -3'
miRNA:   3'- -GCAUGC-----------UGUGCGU--UC-CGCCGaGCUgG- -5'
22569 3' -55.5 NC_005091.1 + 51550 0.67 0.661904
Target:  5'- cCGcGCGGCAuCGCcaaguGGGCGGaagcgaCGACCg -3'
miRNA:   3'- -GCaUGCUGU-GCGu----UCCGCCga----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 51003 0.69 0.56497
Target:  5'- --gGCGGCG-GUAAGGCuGGCauuaaUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGUUCCG-CCG-----AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 50941 0.69 0.596028
Target:  5'- gCGUcaGCGAC-CGCAAGcGCGGUgcgcacgggcaaaUCGGCa -3'
miRNA:   3'- -GCA--UGCUGuGCGUUC-CGCCG-------------AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 49769 0.66 0.725717
Target:  5'- aCGgcuUGGCAUGCAGcacgcuCGGCUCGAUCg -3'
miRNA:   3'- -GCau-GCUGUGCGUUcc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 48942 0.69 0.57564
Target:  5'- gCGUGCGACgguuugAgGCGGGGCaggauuggGGCUUGGCg -3'
miRNA:   3'- -GCAUGCUG------UgCGUUCCG--------CCGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 46437 0.73 0.342696
Target:  5'- ---uCGGCAUGCAAGGCGaucaagaaggcgacGCUCGACa -3'
miRNA:   3'- gcauGCUGUGCGUUCCGC--------------CGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 44877 0.72 0.423934
Target:  5'- aCGgGCGGCG-GCAAGGCGGC-CGAa- -3'
miRNA:   3'- -GCaUGCUGUgCGUUCCGCCGaGCUgg -5'
22569 3' -55.5 NC_005091.1 + 44655 0.71 0.433335
Target:  5'- aCGUACGACGCgGCcgagAAGGCG-CUCGAa- -3'
miRNA:   3'- -GCAUGCUGUG-CG----UUCCGCcGAGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.