miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 8112 0.66 0.7666
Target:  5'- uCGaACGACAgGUAAuGCaGGC-CGACCu -3'
miRNA:   3'- -GCaUGCUGUgCGUUcCG-CCGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 16564 0.68 0.640308
Target:  5'- aGUACG-CGCGgAAGaauucCGGCUgGGCCg -3'
miRNA:   3'- gCAUGCuGUGCgUUCc----GCCGAgCUGG- -5'
22569 3' -55.5 NC_005091.1 + 21869 0.68 0.618684
Target:  5'- ---cCGACACGaAGGGCGucaGCUCGGCa -3'
miRNA:   3'- gcauGCUGUGCgUUCCGC---CGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 54517 0.76 0.250894
Target:  5'- aCGUcCGACACGgAAGGCGGCgaaACCc -3'
miRNA:   3'- -GCAuGCUGUGCgUUCCGCCGagcUGG- -5'
22569 3' -55.5 NC_005091.1 + 21639 0.66 0.745359
Target:  5'- aCGUACGACAucaugguCGCca-GCGGCUacaccccgGACCa -3'
miRNA:   3'- -GCAUGCUGU-------GCGuucCGCCGAg-------CUGG- -5'
22569 3' -55.5 NC_005091.1 + 5098 0.66 0.725717
Target:  5'- ---uUGACACGCGuuGCGGCgcaggacgCGAUCg -3'
miRNA:   3'- gcauGCUGUGCGUucCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 16325 0.67 0.715244
Target:  5'- gCGaGCGGCGCaucGCAugccGGCGGcCUCGuCCc -3'
miRNA:   3'- -GCaUGCUGUG---CGUu---CCGCC-GAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 35214 0.67 0.714192
Target:  5'- --cGCGACGCGUaccacaagcugcuGAccGGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUGCG-------------UU--CCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 14086 0.67 0.682321
Target:  5'- -aUAUGugGCGCGcgaucuccggaacGGGCGGUgCGACg -3'
miRNA:   3'- gcAUGCugUGCGU-------------UCCGCCGaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 22142 0.68 0.640308
Target:  5'- -aUACGACgaucaccaucaaGCGCA--GCGGCUUGGCUg -3'
miRNA:   3'- gcAUGCUG------------UGCGUucCGCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 51550 0.67 0.661904
Target:  5'- cCGcGCGGCAuCGCcaaguGGGCGGaagcgaCGACCg -3'
miRNA:   3'- -GCaUGCUGU-GCGu----UCCGCCga----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 22034 0.67 0.704691
Target:  5'- uGUAuCGuCGCGUAuuggGGGUaacGCUCGACCa -3'
miRNA:   3'- gCAU-GCuGUGCGU----UCCGc--CGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 31874 0.66 0.756553
Target:  5'- cCGUGuCGuCGCGCucgucGGCGGCcugcUCGugCc -3'
miRNA:   3'- -GCAU-GCuGUGCGuu---CCGCCG----AGCugG- -5'
22569 3' -55.5 NC_005091.1 + 9057 0.68 0.651114
Target:  5'- uGUACGACGCGCucgccGGGaaGUaaCGGCCg -3'
miRNA:   3'- gCAUGCUGUGCGu----UCCgcCGa-GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 56451 0.66 0.754528
Target:  5'- -cUGCGGCugGCGuauggggcuucuGGCGGgaCGGCa -3'
miRNA:   3'- gcAUGCUGugCGUu-----------CCGCCgaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 52733 0.67 0.708921
Target:  5'- uCGUACcucauccucgguucgGGCAuCGCuuGGGCGGCugUCGGCUu -3'
miRNA:   3'- -GCAUG---------------CUGU-GCGu-UCCGCCG--AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 13067 0.68 0.651114
Target:  5'- --gGCGGCAgGCAAuacGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUgCGUUc--CGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 55210 0.68 0.629495
Target:  5'- --cGCGGCccguGCGCGGGGgucCGGCUCGGuucCCg -3'
miRNA:   3'- gcaUGCUG----UGCGUUCC---GCCGAGCU---GG- -5'
22569 3' -55.5 NC_005091.1 + 44134 0.66 0.746382
Target:  5'- aGUACGuCGCGCAgucugucgaauGGGCGcagucGCUucccggCGACCu -3'
miRNA:   3'- gCAUGCuGUGCGU-----------UCCGC-----CGA------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 7504 0.67 0.715244
Target:  5'- --aGCGGCA-GCcgguucuucGGGCaGCUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGu--------UCCGcCGAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.