miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22570 5' -52.7 NC_005091.1 + 41092 0.66 0.891936
Target:  5'- -cGUCGGccccgGCCGGCGUCUcCGuuuuCCCc -3'
miRNA:   3'- gaCAGCCug---CGGUUGUAGA-GCuu--GGG- -5'
22570 5' -52.7 NC_005091.1 + 10427 0.66 0.891936
Target:  5'- aUGUCGGGCGCgCGACAcg-CGcaguACUCu -3'
miRNA:   3'- gACAGCCUGCG-GUUGUagaGCu---UGGG- -5'
22570 5' -52.7 NC_005091.1 + 55798 0.66 0.891936
Target:  5'- aCUG-CGGcuGCGCCGACugCUCGGGCa- -3'
miRNA:   3'- -GACaGCC--UGCGGUUGuaGAGCUUGgg -5'
22570 5' -52.7 NC_005091.1 + 53504 0.66 0.891936
Target:  5'- gUGUCGccauCGCCGuguuCAUCggCGAACCa -3'
miRNA:   3'- gACAGCcu--GCGGUu---GUAGa-GCUUGGg -5'
22570 5' -52.7 NC_005091.1 + 33582 0.66 0.88459
Target:  5'- aUG-CGGAucgaUGCCGGCcUCUCG-ACCUa -3'
miRNA:   3'- gACaGCCU----GCGGUUGuAGAGCuUGGG- -5'
22570 5' -52.7 NC_005091.1 + 28143 0.66 0.88459
Target:  5'- -aGcCGGAUgcaGCCGACAUCacCGAcacgaaGCCCa -3'
miRNA:   3'- gaCaGCCUG---CGGUUGUAGa-GCU------UGGG- -5'
22570 5' -52.7 NC_005091.1 + 11663 0.66 0.869122
Target:  5'- -cGUaCGGACaGCCGaaGCGccagCUCGAugCCc -3'
miRNA:   3'- gaCA-GCCUG-CGGU--UGUa---GAGCUugGG- -5'
22570 5' -52.7 NC_005091.1 + 40998 0.66 0.869122
Target:  5'- --cUCGGccguACGCCGAaagcgCUCGAACCg -3'
miRNA:   3'- gacAGCC----UGCGGUUgua--GAGCUUGGg -5'
22570 5' -52.7 NC_005091.1 + 24621 0.66 0.852665
Target:  5'- -cGUCcGGCGgcuuguaCGACAUCgCGGACCCg -3'
miRNA:   3'- gaCAGcCUGCg------GUUGUAGaGCUUGGG- -5'
22570 5' -52.7 NC_005091.1 + 7174 0.66 0.852665
Target:  5'- uUGcCGGcaGCGgCGGcCGUCUCGAugCCc -3'
miRNA:   3'- gACaGCC--UGCgGUU-GUAGAGCUugGG- -5'
22570 5' -52.7 NC_005091.1 + 19631 0.66 0.850114
Target:  5'- uCUGUCGGcgGCGCucggcccgaaagcgCAGCAaC-CGGACCCc -3'
miRNA:   3'- -GACAGCC--UGCG--------------GUUGUaGaGCUUGGG- -5'
22570 5' -52.7 NC_005091.1 + 7002 0.67 0.817033
Target:  5'- -gGUCGGAgauguucaguucCGCCAugAUCucuuucuucgUCGcGCCCg -3'
miRNA:   3'- gaCAGCCU------------GCGGUugUAG----------AGCuUGGG- -5'
22570 5' -52.7 NC_005091.1 + 34479 0.67 0.807612
Target:  5'- cCUGUCGaACccguaCCAGCAaCUCGAcacGCCCa -3'
miRNA:   3'- -GACAGCcUGc----GGUUGUaGAGCU---UGGG- -5'
22570 5' -52.7 NC_005091.1 + 22847 0.67 0.807612
Target:  5'- gCUGcUCGGcCGCCAuauucgauugcuGCAcgCUCGucGCCCa -3'
miRNA:   3'- -GAC-AGCCuGCGGU------------UGUa-GAGCu-UGGG- -5'
22570 5' -52.7 NC_005091.1 + 26729 0.68 0.778282
Target:  5'- -cGcCGGGcCGCCGACucgaUCGAccGCCCg -3'
miRNA:   3'- gaCaGCCU-GCGGUUGuag-AGCU--UGGG- -5'
22570 5' -52.7 NC_005091.1 + 44024 0.68 0.757949
Target:  5'- ---aUGGACGUgGGCGgcuUCGAACCCg -3'
miRNA:   3'- gacaGCCUGCGgUUGUag-AGCUUGGG- -5'
22570 5' -52.7 NC_005091.1 + 40464 0.69 0.737099
Target:  5'- -aGUCGuGCGCCucuuggcggGACAUgUCGAuACCCa -3'
miRNA:   3'- gaCAGCcUGCGG---------UUGUAgAGCU-UGGG- -5'
22570 5' -52.7 NC_005091.1 + 6146 0.7 0.694216
Target:  5'- -aGUCGGACGCgAacuuucugGCGUCuccgucguccUCGAacGCCCg -3'
miRNA:   3'- gaCAGCCUGCGgU--------UGUAG----------AGCU--UGGG- -5'
22570 5' -52.7 NC_005091.1 + 45617 0.7 0.694216
Target:  5'- -cGcCGGGCGUCGauaucgACAUCUCGGACg- -3'
miRNA:   3'- gaCaGCCUGCGGU------UGUAGAGCUUGgg -5'
22570 5' -52.7 NC_005091.1 + 29577 0.7 0.683316
Target:  5'- gUGaUCGGcgcGCGCCAGCGUCcuacgUCGcucGCCCg -3'
miRNA:   3'- gAC-AGCC---UGCGGUUGUAG-----AGCu--UGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.