miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22572 5' -51 NC_005091.1 + 17245 1.12 0.001703
Target:  5'- aGCAAACACGCUGAUCGUGCAGCAGACc -3'
miRNA:   3'- -CGUUUGUGCGACUAGCACGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 20147 0.81 0.193975
Target:  5'- -uGAACGCGCaGAUCGUcggGCAGCAGAUg -3'
miRNA:   3'- cgUUUGUGCGaCUAGCA---CGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 17901 0.77 0.327918
Target:  5'- gGCGAACGagaucacgauacguCGCcucGGUCGUGCGGUAGACg -3'
miRNA:   3'- -CGUUUGU--------------GCGa--CUAGCACGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 24221 0.76 0.392495
Target:  5'- aGCcGGCACGCUG-UCG-GCAGUGGAUg -3'
miRNA:   3'- -CGuUUGUGCGACuAGCaCGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 49043 0.73 0.559045
Target:  5'- uGCGGGCGCGCUGcugcgcacCGUGU-GCGGGCg -3'
miRNA:   3'- -CGUUUGUGCGACua------GCACGuCGUCUG- -5'
22572 5' -51 NC_005091.1 + 8226 0.72 0.570279
Target:  5'- aGCGGACGUGCUGAUCGcgguacuggGCGGCGucGGCa -3'
miRNA:   3'- -CGUUUGUGCGACUAGCa--------CGUCGU--CUG- -5'
22572 5' -51 NC_005091.1 + 47352 0.72 0.604268
Target:  5'- -aAGACGCGCUGccgcUCGUGCGGaacGACa -3'
miRNA:   3'- cgUUUGUGCGACu---AGCACGUCgu-CUG- -5'
22572 5' -51 NC_005091.1 + 41638 0.7 0.717558
Target:  5'- aGCAuguacGCACGCgccAUCGUGCAGCGc-- -3'
miRNA:   3'- -CGUu----UGUGCGac-UAGCACGUCGUcug -5'
22572 5' -51 NC_005091.1 + 56831 0.7 0.728591
Target:  5'- aGCGAcgGCAauUGCcGAUCGUGCAGagaAGAUa -3'
miRNA:   3'- -CGUU--UGU--GCGaCUAGCACGUCg--UCUG- -5'
22572 5' -51 NC_005091.1 + 57932 0.7 0.73952
Target:  5'- cGCcuGCGCGCUGAUCGaccgccgauUGCuGCucGACc -3'
miRNA:   3'- -CGuuUGUGCGACUAGC---------ACGuCGu-CUG- -5'
22572 5' -51 NC_005091.1 + 538 0.7 0.73952
Target:  5'- cGCcuGCGCGCUGAUCGaccgccgauUGCuGCucGACc -3'
miRNA:   3'- -CGuuUGUGCGACUAGC---------ACGuCGu-CUG- -5'
22572 5' -51 NC_005091.1 + 49495 0.69 0.750332
Target:  5'- uGCGAACACGa----CGaGCGGCAGGCa -3'
miRNA:   3'- -CGUUUGUGCgacuaGCaCGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 16949 0.69 0.754621
Target:  5'- aCGAACGgcuCGCUgcagcuucucgauacGAUCGUGCAGCuuGGCg -3'
miRNA:   3'- cGUUUGU---GCGA---------------CUAGCACGUCGu-CUG- -5'
22572 5' -51 NC_005091.1 + 6450 0.69 0.771556
Target:  5'- aGCGuGCGCGCUGcgC-UGaaggaAGCAGGCg -3'
miRNA:   3'- -CGUuUGUGCGACuaGcACg----UCGUCUG- -5'
22572 5' -51 NC_005091.1 + 26493 0.69 0.781942
Target:  5'- cGCAGGCaACGCaGGcugCGgcugccGCAGCAGACc -3'
miRNA:   3'- -CGUUUG-UGCGaCUa--GCa-----CGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 2178 0.69 0.792161
Target:  5'- cGCGGACuCGUUGAgaUCGcUGU-GCAGACg -3'
miRNA:   3'- -CGUUUGuGCGACU--AGC-ACGuCGUCUG- -5'
22572 5' -51 NC_005091.1 + 21195 0.69 0.792161
Target:  5'- cGCucGACGCGCucgUGAUCGauucuagaauUGCAgcGCAGGCg -3'
miRNA:   3'- -CGu-UUGUGCG---ACUAGC----------ACGU--CGUCUG- -5'
22572 5' -51 NC_005091.1 + 46423 0.68 0.812049
Target:  5'- -uGAACAUGCUGAacUCG-GCAuGCAaGGCg -3'
miRNA:   3'- cgUUUGUGCGACU--AGCaCGU-CGU-CUG- -5'
22572 5' -51 NC_005091.1 + 57826 0.68 0.831125
Target:  5'- cGCGAcgGCGCaGGUCGaGCAGCAaucGGCg -3'
miRNA:   3'- -CGUUugUGCGaCUAGCaCGUCGU---CUG- -5'
22572 5' -51 NC_005091.1 + 432 0.68 0.831125
Target:  5'- cGCGAcgGCGCaGGUCGaGCAGCAaucGGCg -3'
miRNA:   3'- -CGUUugUGCGaCUAGCaCGUCGU---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.