miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22572 5' -51 NC_005091.1 + 49043 0.73 0.559045
Target:  5'- uGCGGGCGCGCUGcugcgcacCGUGU-GCGGGCg -3'
miRNA:   3'- -CGUUUGUGCGACua------GCACGuCGUCUG- -5'
22572 5' -51 NC_005091.1 + 57180 0.66 0.91809
Target:  5'- gGCGAAgACGCUGuucaacguUCG-GCcauGGUAGGCa -3'
miRNA:   3'- -CGUUUgUGCGACu-------AGCaCG---UCGUCUG- -5'
22572 5' -51 NC_005091.1 + 36590 0.66 0.91809
Target:  5'- uGCAugGGgGCGCU--UCGUGCGGC-GAUg -3'
miRNA:   3'- -CGU--UUgUGCGAcuAGCACGUCGuCUG- -5'
22572 5' -51 NC_005091.1 + 51818 0.66 0.904781
Target:  5'- gGCuuGCGCGC-GAUUGUGUacGGCcauGGCg -3'
miRNA:   3'- -CGuuUGUGCGaCUAGCACG--UCGu--CUG- -5'
22572 5' -51 NC_005091.1 + 25068 0.67 0.882645
Target:  5'- cGCAAGCGCgGCguucaaccGAUCG-GCGGCcacggAGGCg -3'
miRNA:   3'- -CGUUUGUG-CGa-------CUAGCaCGUCG-----UCUG- -5'
22572 5' -51 NC_005091.1 + 1008 0.67 0.882645
Target:  5'- cGCGGGCGCGCUGcUCG-GCGuCAauacGACg -3'
miRNA:   3'- -CGUUUGUGCGACuAGCaCGUcGU----CUG- -5'
22572 5' -51 NC_005091.1 + 27609 0.67 0.874706
Target:  5'- -uGAAUACGUcGGUCGUGUgGGCGGAa -3'
miRNA:   3'- cgUUUGUGCGaCUAGCACG-UCGUCUg -5'
22572 5' -51 NC_005091.1 + 42601 0.67 0.866497
Target:  5'- uCGGACGCuucguuuccgauGCauUGAUCGUGUAGCAGcCu -3'
miRNA:   3'- cGUUUGUG------------CG--ACUAGCACGUCGUCuG- -5'
22572 5' -51 NC_005091.1 + 48753 0.67 0.866497
Target:  5'- uGCGGGCACGCcacac--GCGGCAGGCc -3'
miRNA:   3'- -CGUUUGUGCGacuagcaCGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 8680 0.67 0.866497
Target:  5'- -gGGGCACGCUGuUCaGUGCAcucGUAGAa -3'
miRNA:   3'- cgUUUGUGCGACuAG-CACGU---CGUCUg -5'
22572 5' -51 NC_005091.1 + 57826 0.68 0.831125
Target:  5'- cGCGAcgGCGCaGGUCGaGCAGCAaucGGCg -3'
miRNA:   3'- -CGUUugUGCGaCUAGCaCGUCGU---CUG- -5'
22572 5' -51 NC_005091.1 + 46423 0.68 0.812049
Target:  5'- -uGAACAUGCUGAacUCG-GCAuGCAaGGCg -3'
miRNA:   3'- cgUUUGUGCGACU--AGCaCGU-CGU-CUG- -5'
22572 5' -51 NC_005091.1 + 432 0.68 0.831125
Target:  5'- cGCGAcgGCGCaGGUCGaGCAGCAaucGGCg -3'
miRNA:   3'- -CGUUugUGCGaCUAGCaCGUCGU---CUG- -5'
22572 5' -51 NC_005091.1 + 17901 0.77 0.327918
Target:  5'- gGCGAACGagaucacgauacguCGCcucGGUCGUGCGGUAGACg -3'
miRNA:   3'- -CGUUUGU--------------GCGa--CUAGCACGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 8226 0.72 0.570279
Target:  5'- aGCGGACGUGCUGAUCGcgguacuggGCGGCGucGGCa -3'
miRNA:   3'- -CGUUUGUGCGACUAGCa--------CGUCGU--CUG- -5'
22572 5' -51 NC_005091.1 + 47352 0.72 0.604268
Target:  5'- -aAGACGCGCUGccgcUCGUGCGGaacGACa -3'
miRNA:   3'- cgUUUGUGCGACu---AGCACGUCgu-CUG- -5'
22572 5' -51 NC_005091.1 + 41638 0.7 0.717558
Target:  5'- aGCAuguacGCACGCgccAUCGUGCAGCGc-- -3'
miRNA:   3'- -CGUu----UGUGCGac-UAGCACGUCGUcug -5'
22572 5' -51 NC_005091.1 + 56831 0.7 0.728591
Target:  5'- aGCGAcgGCAauUGCcGAUCGUGCAGagaAGAUa -3'
miRNA:   3'- -CGUU--UGU--GCGaCUAGCACGUCg--UCUG- -5'
22572 5' -51 NC_005091.1 + 49495 0.69 0.750332
Target:  5'- uGCGAACACGa----CGaGCGGCAGGCa -3'
miRNA:   3'- -CGUUUGUGCgacuaGCaCGUCGUCUG- -5'
22572 5' -51 NC_005091.1 + 6450 0.69 0.771556
Target:  5'- aGCGuGCGCGCUGcgC-UGaaggaAGCAGGCg -3'
miRNA:   3'- -CGUuUGUGCGACuaGcACg----UCGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.