miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22574 5' -60.1 NC_005091.1 + 12458 0.75 0.143581
Target:  5'- aGUCgCCGCCGucgcACUGgcCGCGCUCGUCGCg -3'
miRNA:   3'- -CAG-GGCGGCu---UGGC--GUGUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 12590 0.66 0.496193
Target:  5'- --gUgGCCGAuUCGCGCGCCCGgucucggaugUCGCc -3'
miRNA:   3'- cagGgCGGCUuGGCGUGUGGGC----------AGCG- -5'
22574 5' -60.1 NC_005091.1 + 12978 0.66 0.496193
Target:  5'- cGUCCgGgCCGAGCgGCGuauUGCCUGcCGCc -3'
miRNA:   3'- -CAGGgC-GGCUUGgCGU---GUGGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 13503 0.66 0.520139
Target:  5'- --gCCGCCGAGaCCGUucacgucgcugcucgACGCCgGgUCGCu -3'
miRNA:   3'- cagGGCGGCUU-GGCG---------------UGUGGgC-AGCG- -5'
22574 5' -60.1 NC_005091.1 + 13905 0.67 0.448015
Target:  5'- cGUCUgGuuGAACCGCAgcuugUACCgG-CGCg -3'
miRNA:   3'- -CAGGgCggCUUGGCGU-----GUGGgCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 14027 0.72 0.211802
Target:  5'- -aCCC-CCGAGuCCGCACcgaaguggaucgACUCGUCGCg -3'
miRNA:   3'- caGGGcGGCUU-GGCGUG------------UGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 14926 0.66 0.526198
Target:  5'- cUCCCGCCuguCauggGCGCAUCCGgugguUCGCa -3'
miRNA:   3'- cAGGGCGGcuuGg---CGUGUGGGC-----AGCG- -5'
22574 5' -60.1 NC_005091.1 + 15046 0.66 0.526198
Target:  5'- cUCCCGCCuguCauggGCGCAUCCGgugguUCGCa -3'
miRNA:   3'- cAGGGCGGcuuGg---CGUGUGGGC-----AGCG- -5'
22574 5' -60.1 NC_005091.1 + 15166 0.66 0.526198
Target:  5'- cUCCCGCCuguCauggGCGCAUCCGgugguUCGCa -3'
miRNA:   3'- cAGGGCGGcuuGg---CGUGUGGGC-----AGCG- -5'
22574 5' -60.1 NC_005091.1 + 15241 0.74 0.172496
Target:  5'- cGUCCCGCUGccGCCGCGCGuguaCCGUUGg -3'
miRNA:   3'- -CAGGGCGGCu-UGGCGUGUg---GGCAGCg -5'
22574 5' -60.1 NC_005091.1 + 15472 0.72 0.228426
Target:  5'- aGUCCaUGCCGuaguCCauGCACugCCGUCGUc -3'
miRNA:   3'- -CAGG-GCGGCuu--GG--CGUGugGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 16659 0.66 0.526198
Target:  5'- -gCCCGUgGAGCCGCugaaagcggucCACCCGa-GCu -3'
miRNA:   3'- caGGGCGgCUUGGCGu----------GUGGGCagCG- -5'
22574 5' -60.1 NC_005091.1 + 17634 0.66 0.486363
Target:  5'- gGUUgCGUCGAcacgcucccgGCCGCGCAUCU-UCGCa -3'
miRNA:   3'- -CAGgGCGGCU----------UGGCGUGUGGGcAGCG- -5'
22574 5' -60.1 NC_005091.1 + 18007 0.69 0.336188
Target:  5'- -gCCgGCCGucuACCGCACGaCCGagGCg -3'
miRNA:   3'- caGGgCGGCu--UGGCGUGUgGGCagCG- -5'
22574 5' -60.1 NC_005091.1 + 18034 1.11 0.000279
Target:  5'- cGUCCCGCCGAACCGCACACCCGUCGCg -3'
miRNA:   3'- -CAGGGCGGCUUGGCGUGUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 18904 0.72 0.206496
Target:  5'- aUUCCGCCGAGCauCGCGgCCaGUCGCg -3'
miRNA:   3'- cAGGGCGGCUUGgcGUGUgGG-CAGCG- -5'
22574 5' -60.1 NC_005091.1 + 19567 0.66 0.485385
Target:  5'- uUCCCGCaGGccacggagggcacGCCGCAgGCC-GUCGUg -3'
miRNA:   3'- cAGGGCGgCU-------------UGGCGUgUGGgCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 20399 0.66 0.516116
Target:  5'- aUCCCGUgGAACaacaGUACGuaCGUUGCg -3'
miRNA:   3'- cAGGGCGgCUUGg---CGUGUggGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 21785 0.69 0.352005
Target:  5'- --aCUGCCGAGCUG-ACGCCCuUCGUg -3'
miRNA:   3'- cagGGCGGCUUGGCgUGUGGGcAGCG- -5'
22574 5' -60.1 NC_005091.1 + 22517 0.71 0.271513
Target:  5'- -aCCCGaaaggCGGAUCGCGCugCCGUcuaCGCg -3'
miRNA:   3'- caGGGCg----GCUUGGCGUGugGGCA---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.