miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22574 5' -60.1 NC_005091.1 + 521 0.69 0.352005
Target:  5'- --aCCGCCGAuuGCUGCucgACcuGCgCCGUCGCg -3'
miRNA:   3'- cagGGCGGCU--UGGCG---UG--UG-GGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 897 0.67 0.442407
Target:  5'- aUCCCgGCgCGAucaucauugcgaccuGCuCGCACGCCauguuCGUCGCg -3'
miRNA:   3'- cAGGG-CG-GCU---------------UG-GCGUGUGG-----GCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 961 0.67 0.466985
Target:  5'- cGUCgUGCCGGAacCCGCGCugaucUCCGUccCGCa -3'
miRNA:   3'- -CAGgGCGGCUU--GGCGUGu----GGGCA--GCG- -5'
22574 5' -60.1 NC_005091.1 + 1096 0.72 0.234208
Target:  5'- cGUCguauugaCGCCGAGCaGCGCGCCCG-CGUc -3'
miRNA:   3'- -CAGg------GCGGCUUGgCGUGUGGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 1244 0.66 0.476625
Target:  5'- aUUUCGCCGGgaugGCUGCACGCCaGUUaGCg -3'
miRNA:   3'- cAGGGCGGCU----UGGCGUGUGGgCAG-CG- -5'
22574 5' -60.1 NC_005091.1 + 3682 0.73 0.201305
Target:  5'- -aCCgGCCGAACUGCACAugggUCCGUC-Cg -3'
miRNA:   3'- caGGgCGGCUUGGCGUGU----GGGCAGcG- -5'
22574 5' -60.1 NC_005091.1 + 4111 0.67 0.448015
Target:  5'- cGUCaaGCuCGAcaACUGCugGCCCGgcaCGCc -3'
miRNA:   3'- -CAGggCG-GCU--UGGCGugUGGGCa--GCG- -5'
22574 5' -60.1 NC_005091.1 + 4204 0.74 0.155388
Target:  5'- gGUCCUGUCGuugcccGGCgGCGCGCCCGUCa- -3'
miRNA:   3'- -CAGGGCGGC------UUGgCGUGUGGGCAGcg -5'
22574 5' -60.1 NC_005091.1 + 5232 0.7 0.313448
Target:  5'- --gCCGCCccgGAucacaucacugGCCGCACGgCCGUUGCg -3'
miRNA:   3'- cagGGCGG---CU-----------UGGCGUGUgGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 6080 0.67 0.457448
Target:  5'- cGUCCgacUGUCGcGCCGCuucgGCUCGUCGCc -3'
miRNA:   3'- -CAGG---GCGGCuUGGCGug--UGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 6565 0.66 0.476625
Target:  5'- -aCCaUGCgGAugCGUucgcCAUCCGUCGCg -3'
miRNA:   3'- caGG-GCGgCUugGCGu---GUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 6634 0.67 0.466985
Target:  5'- cGUUCaUGCCcGAgCGCGCGCUCGUCuGCu -3'
miRNA:   3'- -CAGG-GCGGcUUgGCGUGUGGGCAG-CG- -5'
22574 5' -60.1 NC_005091.1 + 6695 0.68 0.402543
Target:  5'- cGUCCUuaagGCCGGccaacACCGCuugGCugCgGUCGCc -3'
miRNA:   3'- -CAGGG----CGGCU-----UGGCG---UGugGgCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 7476 0.66 0.506112
Target:  5'- -aCCaaGCCGAGgCGCACcagACCaGUCGCu -3'
miRNA:   3'- caGGg-CGGCUUgGCGUG---UGGgCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 9299 0.66 0.496193
Target:  5'- --aCCGCCGGaaacACCGCGCgAUUCGggUCGCc -3'
miRNA:   3'- cagGGCGGCU----UGGCGUG-UGGGC--AGCG- -5'
22574 5' -60.1 NC_005091.1 + 9331 0.7 0.306131
Target:  5'- -aUUCGCCG-GCCGguCGCCCuUCGCa -3'
miRNA:   3'- caGGGCGGCuUGGCguGUGGGcAGCG- -5'
22574 5' -60.1 NC_005091.1 + 9529 0.74 0.151358
Target:  5'- uUCCCGCCGucguGCC-CGCACCCGUg-- -3'
miRNA:   3'- cAGGGCGGCu---UGGcGUGUGGGCAgcg -5'
22574 5' -60.1 NC_005091.1 + 10149 0.67 0.420382
Target:  5'- -aCgCGCCGAgcGCCGCACGuuCCUGaugugCGCg -3'
miRNA:   3'- caGgGCGGCU--UGGCGUGU--GGGCa----GCG- -5'
22574 5' -60.1 NC_005091.1 + 12195 0.67 0.470829
Target:  5'- -gCUCGCCGuGCCguuccgcaucaucaaGCAgGCCCGgcUCGCg -3'
miRNA:   3'- caGGGCGGCuUGG---------------CGUgUGGGC--AGCG- -5'
22574 5' -60.1 NC_005091.1 + 12269 0.66 0.476625
Target:  5'- gGUCCUgauGCCGGACgacaugaaggCGCugAuCCCGcCGCa -3'
miRNA:   3'- -CAGGG---CGGCUUG----------GCGugU-GGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.