miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22574 5' -60.1 NC_005091.1 + 26596 0.68 0.402543
Target:  5'- aGUCCCgGCC--GCCGC-CGgCCGcCGCa -3'
miRNA:   3'- -CAGGG-CGGcuUGGCGuGUgGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 33465 0.7 0.291892
Target:  5'- aGUCuCCGCCGAGgCGCGCGauUUCG-CGCu -3'
miRNA:   3'- -CAG-GGCGGCUUgGCGUGU--GGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 5232 0.7 0.313448
Target:  5'- --gCCGCCccgGAucacaucacugGCCGCACGgCCGUUGCg -3'
miRNA:   3'- cagGGCGG---CU-----------UGGCGUGUgGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 34358 0.69 0.352005
Target:  5'- -gCuuGUCGuACUGCACGCCgCGUCGa -3'
miRNA:   3'- caGggCGGCuUGGCGUGUGG-GCAGCg -5'
22574 5' -60.1 NC_005091.1 + 23842 0.69 0.352005
Target:  5'- aUCgCGCCGAGCUGCACGaggUUGUUGUa -3'
miRNA:   3'- cAGgGCGGCUUGGCGUGUg--GGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 21785 0.69 0.352005
Target:  5'- --aCUGCCGAGCUG-ACGCCCuUCGUg -3'
miRNA:   3'- cagGGCGGCUUGGCgUGUGGGcAGCG- -5'
22574 5' -60.1 NC_005091.1 + 52080 0.68 0.367512
Target:  5'- aUUCCGCCGcauuggcgcGGCCGUaugccgugaaaagGCGgCCGUCGCc -3'
miRNA:   3'- cAGGGCGGC---------UUGGCG-------------UGUgGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 54990 0.68 0.376703
Target:  5'- cGUCCgGCCGGGCgGCcCGCCgGUauccCGUg -3'
miRNA:   3'- -CAGGgCGGCUUGgCGuGUGGgCA----GCG- -5'
22574 5' -60.1 NC_005091.1 + 50927 0.68 0.385191
Target:  5'- -aCCCGCCGuuuGCCGCGuCAgcgaCCGcaagCGCg -3'
miRNA:   3'- caGGGCGGCu--UGGCGU-GUg---GGCa---GCG- -5'
22574 5' -60.1 NC_005091.1 + 37353 0.7 0.289107
Target:  5'- cGUCCuCGCCGucgccacuuccuCCGCuguCACCCGUUGa -3'
miRNA:   3'- -CAGG-GCGGCuu----------GGCGu--GUGGGCAGCg -5'
22574 5' -60.1 NC_005091.1 + 53451 0.71 0.252293
Target:  5'- aUCCCGCCaGAaaGCCGC--GCCCGU-GCg -3'
miRNA:   3'- cAGGGCGG-CU--UGGCGugUGGGCAgCG- -5'
22574 5' -60.1 NC_005091.1 + 44801 0.71 0.252293
Target:  5'- --gCCGCCuuGCCGC-CGCCCGUacCGCc -3'
miRNA:   3'- cagGGCGGcuUGGCGuGUGGGCA--GCG- -5'
22574 5' -60.1 NC_005091.1 + 4204 0.74 0.155388
Target:  5'- gGUCCUGUCGuugcccGGCgGCGCGCCCGUCa- -3'
miRNA:   3'- -CAGGGCGGC------UUGgCGUGUGGGCAGcg -5'
22574 5' -60.1 NC_005091.1 + 15241 0.74 0.172496
Target:  5'- cGUCCCGCUGccGCCGCGCGuguaCCGUUGg -3'
miRNA:   3'- -CAGGGCGGCu-UGGCGUGUg---GGCAGCg -5'
22574 5' -60.1 NC_005091.1 + 3682 0.73 0.201305
Target:  5'- -aCCgGCCGAACUGCACAugggUCCGUC-Cg -3'
miRNA:   3'- caGGgCGGCUUGGCGUGU----GGGCAGcG- -5'
22574 5' -60.1 NC_005091.1 + 22855 0.73 0.201305
Target:  5'- --gCCGCCauauucGAuuGCUGCACGCUCGUCGCc -3'
miRNA:   3'- cagGGCGG------CU--UGGCGUGUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 18904 0.72 0.206496
Target:  5'- aUUCCGCCGAGCauCGCGgCCaGUCGCg -3'
miRNA:   3'- cAGGGCGGCUUGgcGUGUgGG-CAGCG- -5'
22574 5' -60.1 NC_005091.1 + 28998 0.72 0.225015
Target:  5'- cUCCgCGCCGAACUGCACucgguuucgauagauGCCCGaCGa -3'
miRNA:   3'- cAGG-GCGGCUUGGCGUG---------------UGGGCaGCg -5'
22574 5' -60.1 NC_005091.1 + 15472 0.72 0.228426
Target:  5'- aGUCCaUGCCGuaguCCauGCACugCCGUCGUc -3'
miRNA:   3'- -CAGG-GCGGCuu--GG--CGUGugGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 34685 0.71 0.240112
Target:  5'- aGUUgaGCCGGuACUGCGCGCCCacgaugcuGUCGCg -3'
miRNA:   3'- -CAGggCGGCU-UGGCGUGUGGG--------CAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.