miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22574 5' -60.1 NC_005091.1 + 18034 1.11 0.000279
Target:  5'- cGUCCCGCCGAACCGCACACCCGUCGCg -3'
miRNA:   3'- -CAGGGCGGCUUGGCGUGUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 31639 0.8 0.061883
Target:  5'- cGUUUgGUCGAuACCGCACGCUCGUCGCu -3'
miRNA:   3'- -CAGGgCGGCU-UGGCGUGUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 12458 0.75 0.143581
Target:  5'- aGUCgCCGCCGucgcACUGgcCGCGCUCGUCGCg -3'
miRNA:   3'- -CAG-GGCGGCu---UGGC--GUGUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 9529 0.74 0.151358
Target:  5'- uUCCCGCCGucguGCC-CGCACCCGUg-- -3'
miRNA:   3'- cAGGGCGGCu---UGGcGUGUGGGCAgcg -5'
22574 5' -60.1 NC_005091.1 + 4204 0.74 0.155388
Target:  5'- gGUCCUGUCGuugcccGGCgGCGCGCCCGUCa- -3'
miRNA:   3'- -CAGGGCGGC------UUGgCGUGUGGGCAGcg -5'
22574 5' -60.1 NC_005091.1 + 15241 0.74 0.172496
Target:  5'- cGUCCCGCUGccGCCGCGCGuguaCCGUUGg -3'
miRNA:   3'- -CAGGGCGGCu-UGGCGUGUg---GGCAGCg -5'
22574 5' -60.1 NC_005091.1 + 22855 0.73 0.201305
Target:  5'- --gCCGCCauauucGAuuGCUGCACGCUCGUCGCc -3'
miRNA:   3'- cagGGCGG------CU--UGGCGUGUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 3682 0.73 0.201305
Target:  5'- -aCCgGCCGAACUGCACAugggUCCGUC-Cg -3'
miRNA:   3'- caGGgCGGCUUGGCGUGU----GGGCAGcG- -5'
22574 5' -60.1 NC_005091.1 + 18904 0.72 0.206496
Target:  5'- aUUCCGCCGAGCauCGCGgCCaGUCGCg -3'
miRNA:   3'- cAGGGCGGCUUGgcGUGUgGG-CAGCG- -5'
22574 5' -60.1 NC_005091.1 + 14027 0.72 0.211802
Target:  5'- -aCCC-CCGAGuCCGCACcgaaguggaucgACUCGUCGCg -3'
miRNA:   3'- caGGGcGGCUU-GGCGUG------------UGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 28998 0.72 0.225015
Target:  5'- cUCCgCGCCGAACUGCACucgguuucgauagauGCCCGaCGa -3'
miRNA:   3'- cAGG-GCGGCUUGGCGUG---------------UGGGCaGCg -5'
22574 5' -60.1 NC_005091.1 + 15472 0.72 0.228426
Target:  5'- aGUCCaUGCCGuaguCCauGCACugCCGUCGUc -3'
miRNA:   3'- -CAGG-GCGGCuu--GG--CGUGugGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 1096 0.72 0.234208
Target:  5'- cGUCguauugaCGCCGAGCaGCGCGCCCG-CGUc -3'
miRNA:   3'- -CAGg------GCGGCUUGgCGUGUGGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 34685 0.71 0.240112
Target:  5'- aGUUgaGCCGGuACUGCGCGCCCacgaugcuGUCGCg -3'
miRNA:   3'- -CAGggCGGCU-UGGCGUGUGGG--------CAGCG- -5'
22574 5' -60.1 NC_005091.1 + 53451 0.71 0.252293
Target:  5'- aUCCCGCCaGAaaGCCGC--GCCCGU-GCg -3'
miRNA:   3'- cAGGGCGG-CU--UGGCGugUGGGCAgCG- -5'
22574 5' -60.1 NC_005091.1 + 44801 0.71 0.252293
Target:  5'- --gCCGCCuuGCCGC-CGCCCGUacCGCc -3'
miRNA:   3'- cagGGCGGcuUGGCGuGUGGGCA--GCG- -5'
22574 5' -60.1 NC_005091.1 + 51888 0.71 0.257939
Target:  5'- aUCgCGCgCaAGCCGCACGCCCGgacgccgggaagaUCGCg -3'
miRNA:   3'- cAGgGCG-GcUUGGCGUGUGGGC-------------AGCG- -5'
22574 5' -60.1 NC_005091.1 + 22517 0.71 0.271513
Target:  5'- -aCCCGaaaggCGGAUCGCGCugCCGUcuaCGCg -3'
miRNA:   3'- caGGGCg----GCUUGGCGUGugGGCA---GCG- -5'
22574 5' -60.1 NC_005091.1 + 28035 0.7 0.284969
Target:  5'- cGUUCCGCUucaucUCGCACaacgcguacgGCCCGUCGCg -3'
miRNA:   3'- -CAGGGCGGcuu--GGCGUG----------UGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 37353 0.7 0.289107
Target:  5'- cGUCCuCGCCGucgccacuuccuCCGCuguCACCCGUUGa -3'
miRNA:   3'- -CAGG-GCGGCuu----------GGCGu--GUGGGCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.