miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22575 5' -52.6 NC_005091.1 + 23902 0.66 0.857009
Target:  5'- cGAUUacgCAGGaagaGGCGAACCAGAaaAUCAa -3'
miRNA:   3'- -CUAG---GUCUa---CCGCUUGGUCUggUAGU- -5'
22575 5' -52.6 NC_005091.1 + 11553 0.66 0.839496
Target:  5'- cGAUCCuc--GGCGcauucggcuacAGCCGGAUCGUCAa -3'
miRNA:   3'- -CUAGGucuaCCGC-----------UUGGUCUGGUAGU- -5'
22575 5' -52.6 NC_005091.1 + 18768 0.67 0.81154
Target:  5'- -cUCCGGAUaGaaGACCGGGCCGUCc -3'
miRNA:   3'- cuAGGUCUAcCgcUUGGUCUGGUAGu -5'
22575 5' -52.6 NC_005091.1 + 37804 0.67 0.81154
Target:  5'- uGAUCCGGuUGGCGAcauCgAGGCacaCAUCAa -3'
miRNA:   3'- -CUAGGUCuACCGCUu--GgUCUG---GUAGU- -5'
22575 5' -52.6 NC_005091.1 + 13029 0.67 0.781811
Target:  5'- cGAUCCAGAccgagcuaucuuUGG-GGACCAG-CCAUa- -3'
miRNA:   3'- -CUAGGUCU------------ACCgCUUGGUCuGGUAgu -5'
22575 5' -52.6 NC_005091.1 + 20147 0.67 0.77156
Target:  5'- uGUCCGGGucguuguagUGGUGuucCCGGAUCGUCAg -3'
miRNA:   3'- cUAGGUCU---------ACCGCuu-GGUCUGGUAGU- -5'
22575 5' -52.6 NC_005091.1 + 13909 0.68 0.718292
Target:  5'- cGUUCAGcgGGCGcAGCguGACgGUCAg -3'
miRNA:   3'- cUAGGUCuaCCGC-UUGguCUGgUAGU- -5'
22575 5' -52.6 NC_005091.1 + 9138 0.69 0.696273
Target:  5'- cGUCCAGAUGGCGAuguCgCAcGCCGaaaUCAa -3'
miRNA:   3'- cUAGGUCUACCGCUu--G-GUcUGGU---AGU- -5'
22575 5' -52.6 NC_005091.1 + 9835 0.69 0.651549
Target:  5'- gGAUUCGGAUcGCGAuuuCCAcGACCAUCc -3'
miRNA:   3'- -CUAGGUCUAcCGCUu--GGU-CUGGUAGu -5'
22575 5' -52.6 NC_005091.1 + 9465 0.7 0.640292
Target:  5'- cGUCCAGuacGGCG-AUCAGACCGUa- -3'
miRNA:   3'- cUAGGUCua-CCGCuUGGUCUGGUAgu -5'
22575 5' -52.6 NC_005091.1 + 7274 0.7 0.640292
Target:  5'- -uUCCAcGAgcaguuUGGCGAAUCGGACgAUCGu -3'
miRNA:   3'- cuAGGU-CU------ACCGCUUGGUCUGgUAGU- -5'
22575 5' -52.6 NC_005091.1 + 16019 0.7 0.606519
Target:  5'- cGAgcgCCAaGUGGaCGAACCAGACgGUUAc -3'
miRNA:   3'- -CUa--GGUcUACC-GCUUGGUCUGgUAGU- -5'
22575 5' -52.6 NC_005091.1 + 45368 0.71 0.550813
Target:  5'- --aCgAGAUGGCcGACCAGACCAc-- -3'
miRNA:   3'- cuaGgUCUACCGcUUGGUCUGGUagu -5'
22575 5' -52.6 NC_005091.1 + 23534 0.72 0.486238
Target:  5'- uGcgCCAGAUGGCGAGCgucaucaugCAGAUCAUg- -3'
miRNA:   3'- -CuaGGUCUACCGCUUG---------GUCUGGUAgu -5'
22575 5' -52.6 NC_005091.1 + 1192 0.74 0.396841
Target:  5'- -uUCCuGAaGGCGAACCcGGCCAUCc -3'
miRNA:   3'- cuAGGuCUaCCGCUUGGuCUGGUAGu -5'
22575 5' -52.6 NC_005091.1 + 18817 1.09 0.001698
Target:  5'- cGAUCCAGAUGGCGAACCAGACCAUCAa -3'
miRNA:   3'- -CUAGGUCUACCGCUUGGUCUGGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.