miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22581 3' -51.1 NC_005091.1 + 6683 0.66 0.912608
Target:  5'- --cCcgGACGC-CGCGCGaGC--GAUCa -3'
miRNA:   3'- caaGuaCUGCGaGCGCGC-CGaaUUAG- -5'
22581 3' -51.1 NC_005091.1 + 33267 0.66 0.905857
Target:  5'- --aCAUGAagcaGCUCGCgGCGGCc----- -3'
miRNA:   3'- caaGUACUg---CGAGCG-CGCCGaauuag -5'
22581 3' -51.1 NC_005091.1 + 45785 0.66 0.898815
Target:  5'- -----cGGCGCggCGCGCGGCcgAcgCg -3'
miRNA:   3'- caaguaCUGCGa-GCGCGCCGaaUuaG- -5'
22581 3' -51.1 NC_005091.1 + 22766 0.66 0.891484
Target:  5'- cGUUCA-GGCGCgugCGCuCGGCaucGAUCa -3'
miRNA:   3'- -CAAGUaCUGCGa--GCGcGCCGaa-UUAG- -5'
22581 3' -51.1 NC_005091.1 + 2613 0.66 0.883872
Target:  5'- aGUUCGgguuGCGCaCGCGCGGCagaacgUGAUUg -3'
miRNA:   3'- -CAAGUac--UGCGaGCGCGCCGa-----AUUAG- -5'
22581 3' -51.1 NC_005091.1 + 31870 0.66 0.883872
Target:  5'- -gUCGUcGCGCUCGUcgGCGGCcUGcUCg -3'
miRNA:   3'- caAGUAcUGCGAGCG--CGCCGaAUuAG- -5'
22581 3' -51.1 NC_005091.1 + 52888 0.66 0.883095
Target:  5'- ----uUGAUGCUgcugccgCGUGCGGCcUGAUCg -3'
miRNA:   3'- caaguACUGCGA-------GCGCGCCGaAUUAG- -5'
22581 3' -51.1 NC_005091.1 + 15146 0.67 0.850719
Target:  5'- -aUCcgGugGUUCGCauGCGGCgg-GUCu -3'
miRNA:   3'- caAGuaCugCGAGCG--CGCCGaauUAG- -5'
22581 3' -51.1 NC_005091.1 + 15026 0.67 0.850719
Target:  5'- -aUCcgGugGUUCGCauGCGGCgg-GUCu -3'
miRNA:   3'- caAGuaCugCGAGCG--CGCCGaauUAG- -5'
22581 3' -51.1 NC_005091.1 + 14906 0.67 0.850719
Target:  5'- -aUCcgGugGUUCGCauGCGGCgg-GUCu -3'
miRNA:   3'- caAGuaCugCGAGCG--CGCCGaauUAG- -5'
22581 3' -51.1 NC_005091.1 + 18365 0.68 0.832632
Target:  5'- --aCGUGACgaucuGCUCGuUGCGGCUcguGUCg -3'
miRNA:   3'- caaGUACUG-----CGAGC-GCGCCGAau-UAG- -5'
22581 3' -51.1 NC_005091.1 + 47327 0.68 0.823245
Target:  5'- uGUUCGUGAUGa----GCGGCUUGAUUu -3'
miRNA:   3'- -CAAGUACUGCgagcgCGCCGAAUUAG- -5'
22581 3' -51.1 NC_005091.1 + 13886 0.68 0.813641
Target:  5'- -gUCAgcacGACGCUCGuUGCGGCa----- -3'
miRNA:   3'- caAGUa---CUGCGAGC-GCGCCGaauuag -5'
22581 3' -51.1 NC_005091.1 + 19666 0.68 0.803832
Target:  5'- -gUCGUGugGCUCGUGCucauGGUcgcGUCg -3'
miRNA:   3'- caAGUACugCGAGCGCG----CCGaauUAG- -5'
22581 3' -51.1 NC_005091.1 + 52718 0.68 0.803832
Target:  5'- gGUUCGggcauCGCUUGgGCGGCU--GUCg -3'
miRNA:   3'- -CAAGUacu--GCGAGCgCGCCGAauUAG- -5'
22581 3' -51.1 NC_005091.1 + 51797 0.69 0.773297
Target:  5'- cUUCccGGCGUccgggCGUGCGGCUUGcgCg -3'
miRNA:   3'- cAAGuaCUGCGa----GCGCGCCGAAUuaG- -5'
22581 3' -51.1 NC_005091.1 + 49824 0.69 0.762788
Target:  5'- cGUUCGUGGCgGCUUgcgcguugaGCGCGGCa----- -3'
miRNA:   3'- -CAAGUACUG-CGAG---------CGCGCCGaauuag -5'
22581 3' -51.1 NC_005091.1 + 4805 0.7 0.730451
Target:  5'- -gUCGUGgauucucuguucGCGCUCgGCGCGGCggcaacGGUCa -3'
miRNA:   3'- caAGUAC------------UGCGAG-CGCGCCGaa----UUAG- -5'
22581 3' -51.1 NC_005091.1 + 26142 0.7 0.708343
Target:  5'- -gUCGUGguaucaGCGCgUGCGCGGCgagcUGAUCg -3'
miRNA:   3'- caAGUAC------UGCGaGCGCGCCGa---AUUAG- -5'
22581 3' -51.1 NC_005091.1 + 20119 0.7 0.708343
Target:  5'- -gUCgAUGACGUUCaaGCGCGGCg--GUCu -3'
miRNA:   3'- caAG-UACUGCGAG--CGCGCCGaauUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.