miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22583 5' -56.5 NC_005091.1 + 26521 0.68 0.500874
Target:  5'- uCAGGcuGGCCGUGCgGGCauuGGCC-GCCu -3'
miRNA:   3'- -GUCCu-UCGGUACGaCUGg--CUGGuCGG- -5'
22583 5' -56.5 NC_005091.1 + 26609 0.74 0.241416
Target:  5'- gCAGGcGGCCaAUGCccGCaCGGCCAGCCu -3'
miRNA:   3'- -GUCCuUCGG-UACGacUG-GCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 32418 0.69 0.480431
Target:  5'- --cGAAcGCCGUGCUGcuaucaagGCCGACCGcgagcGCCa -3'
miRNA:   3'- gucCUU-CGGUACGAC--------UGGCUGGU-----CGG- -5'
22583 5' -56.5 NC_005091.1 + 33595 0.73 0.274298
Target:  5'- gCAGGcAGCCGUGaugcgGAUCGauGCCGGCCu -3'
miRNA:   3'- -GUCCuUCGGUACga---CUGGC--UGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 34978 0.66 0.629552
Target:  5'- aAGGggGCCAUug-GAaCGACC-GCCg -3'
miRNA:   3'- gUCCuuCGGUAcgaCUgGCUGGuCGG- -5'
22583 5' -56.5 NC_005091.1 + 35200 0.66 0.673242
Target:  5'- ---cAAGCU--GCUGACCGGCCgcucGGCCc -3'
miRNA:   3'- guccUUCGGuaCGACUGGCUGG----UCGG- -5'
22583 5' -56.5 NC_005091.1 + 36499 0.67 0.596771
Target:  5'- -uGGAAgcGCCGUGCUGcGgCGGCCGGaUCg -3'
miRNA:   3'- guCCUU--CGGUACGAC-UgGCUGGUC-GG- -5'
22583 5' -56.5 NC_005091.1 + 45357 0.67 0.60768
Target:  5'- gCAGGAgAGUaacGagaUGGCCGACCAGaCCa -3'
miRNA:   3'- -GUCCU-UCGguaCg--ACUGGCUGGUC-GG- -5'
22583 5' -56.5 NC_005091.1 + 45567 0.68 0.542836
Target:  5'- uCGGGucGCCGaugugaaGCUGGCCGGCguCGGCUu -3'
miRNA:   3'- -GUCCuuCGGUa------CGACUGGCUG--GUCGG- -5'
22583 5' -56.5 NC_005091.1 + 45664 0.74 0.247719
Target:  5'- uCAGGAAGCCGac---GCCGGCCAGCUu -3'
miRNA:   3'- -GUCCUUCGGUacgacUGGCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 48677 0.68 0.500874
Target:  5'- aCAGGcaugccGUCAUGCgUGcGCaCGGCCGGCCa -3'
miRNA:   3'- -GUCCuu----CGGUACG-AC-UG-GCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 52132 0.66 0.673242
Target:  5'- gCGGGgcGCguUGCgGACgauguaaucgaaCGACCAGCg -3'
miRNA:   3'- -GUCCuuCGguACGaCUG------------GCUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 55078 0.69 0.480431
Target:  5'- aCGGGAuaCCG-GCgGGCCGcCCGGCCg -3'
miRNA:   3'- -GUCCUucGGUaCGaCUGGCuGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 55525 0.69 0.440827
Target:  5'- gAGGAcGCCcgGCUGACggCGGCCGcgacGCUa -3'
miRNA:   3'- gUCCUuCGGuaCGACUG--GCUGGU----CGG- -5'
22583 5' -56.5 NC_005091.1 + 55941 0.7 0.391342
Target:  5'- uCAGGccgugcagcucgugcGCCAguUGCUGACCGGCUGcGCCg -3'
miRNA:   3'- -GUCCuu-------------CGGU--ACGACUGGCUGGU-CGG- -5'
22583 5' -56.5 NC_005091.1 + 56590 0.68 0.521692
Target:  5'- aCGGGAuGCgAU--UGACCGGCaCGGCCu -3'
miRNA:   3'- -GUCCUuCGgUAcgACUGGCUG-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.