miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22583 5' -56.5 NC_005091.1 + 2482 0.66 0.651432
Target:  5'- aCGGGAAGCUcggaGUGC-GGCacgaGAUCGGCg -3'
miRNA:   3'- -GUCCUUCGG----UACGaCUGg---CUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 3612 0.67 0.606588
Target:  5'- aCGGGAaaaucgucaAGCCcgaugGCUGgaaaccgGCCGACCugcuGCCg -3'
miRNA:   3'- -GUCCU---------UCGGua---CGAC-------UGGCUGGu---CGG- -5'
22583 5' -56.5 NC_005091.1 + 3725 0.66 0.662351
Target:  5'- gCAGGAacGGCagcagGUcGGCCGGuuuCCAGCCa -3'
miRNA:   3'- -GUCCU--UCGgua--CGaCUGGCU---GGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 4260 0.67 0.578298
Target:  5'- -cGGAAGCCAUucagcuccugcaaggGCUGAcgacucaucCCGuggucguguucgcGCCGGCCg -3'
miRNA:   3'- guCCUUCGGUA---------------CGACU---------GGC-------------UGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 4425 0.66 0.651432
Target:  5'- gUAGGcAGGUCGaGCgGGCaCGcCCAGCCg -3'
miRNA:   3'- -GUCC-UUCGGUaCGaCUG-GCuGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 5060 0.66 0.629552
Target:  5'- -----uGUCAUGC-GGCCGuACCGGCCu -3'
miRNA:   3'- guccuuCGGUACGaCUGGC-UGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 8221 0.67 0.585892
Target:  5'- aAGGAAGCggaCGUGCUGAUCGcgguACUGGgCg -3'
miRNA:   3'- gUCCUUCG---GUACGACUGGC----UGGUCgG- -5'
22583 5' -56.5 NC_005091.1 + 9088 0.67 0.585892
Target:  5'- uGGGucggcGUCGUGCUGAagcgcaaccCCGAUguGCCg -3'
miRNA:   3'- gUCCuu---CGGUACGACU---------GGCUGguCGG- -5'
22583 5' -56.5 NC_005091.1 + 9188 0.66 0.629552
Target:  5'- ---uGAGCC-UGCgucGCCGugCAGCCg -3'
miRNA:   3'- guccUUCGGuACGac-UGGCugGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 9239 0.69 0.470363
Target:  5'- -cGGugcGGCCcUGCgaaGGgCGACCGGCCg -3'
miRNA:   3'- guCCu--UCGGuACGa--CUgGCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 9656 0.66 0.662351
Target:  5'- uCAGGAugguagcGCCGUugaugGCUG-CCGACacggCAGCCu -3'
miRNA:   3'- -GUCCUu------CGGUA-----CGACuGGCUG----GUCGG- -5'
22583 5' -56.5 NC_005091.1 + 9801 0.66 0.673242
Target:  5'- uCAGGAAGCguUaccggguccGCUGGgCGGCUgaaGGCCc -3'
miRNA:   3'- -GUCCUUCGguA---------CGACUgGCUGG---UCGG- -5'
22583 5' -56.5 NC_005091.1 + 10412 0.7 0.431217
Target:  5'- -cGGAAGaCAgggGCUGACCGugAgCGGCCg -3'
miRNA:   3'- guCCUUCgGUa--CGACUGGC--UgGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 10745 0.66 0.651432
Target:  5'- gCGGGAggcgaucaagaaGGCCAUGgaGAUCGAgaAGCg -3'
miRNA:   3'- -GUCCU------------UCGGUACgaCUGGCUggUCGg -5'
22583 5' -56.5 NC_005091.1 + 16016 0.72 0.310673
Target:  5'- uCAGGccgacAAGCguCGUGCUGccGCCGGCCGGCg -3'
miRNA:   3'- -GUCC-----UUCG--GUACGAC--UGGCUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 16442 0.68 0.536462
Target:  5'- aCAGcGucGCCAUGCUcgacGCCGGgauuuggaccucggcCCAGCCg -3'
miRNA:   3'- -GUC-CuuCGGUACGAc---UGGCU---------------GGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 17868 0.67 0.596771
Target:  5'- cCGGGAc-CUGUGCgaGAUCGGCCGGCg -3'
miRNA:   3'- -GUCCUucGGUACGa-CUGGCUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 20231 0.67 0.57505
Target:  5'- cCAGuGAAGCCGcGCagucgagcgUGAUCGAaUCGGCCg -3'
miRNA:   3'- -GUC-CUUCGGUaCG---------ACUGGCU-GGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 22551 1.12 0.000475
Target:  5'- uCAGGAAGCCAUGCUGACCGACCAGCCg -3'
miRNA:   3'- -GUCCUUCGGUACGACUGGCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 24796 0.69 0.440827
Target:  5'- gAGGAAuuccGCCGUGCUGcGCaGGCC-GCCg -3'
miRNA:   3'- gUCCUU----CGGUACGAC-UGgCUGGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.