Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22583 | 5' | -56.5 | NC_005091.1 | + | 22551 | 1.12 | 0.000475 |
Target: 5'- uCAGGAAGCCAUGCUGACCGACCAGCCg -3' miRNA: 3'- -GUCCUUCGGUACGACUGGCUGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 26609 | 0.74 | 0.241416 |
Target: 5'- gCAGGcGGCCaAUGCccGCaCGGCCAGCCu -3' miRNA: 3'- -GUCCuUCGG-UACGacUG-GCUGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 45664 | 0.74 | 0.247719 |
Target: 5'- uCAGGAAGCCGac---GCCGGCCAGCUu -3' miRNA: 3'- -GUCCUUCGGUacgacUGGCUGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 33595 | 0.73 | 0.274298 |
Target: 5'- gCAGGcAGCCGUGaugcgGAUCGauGCCGGCCu -3' miRNA: 3'- -GUCCuUCGGUACga---CUGGC--UGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 16016 | 0.72 | 0.310673 |
Target: 5'- uCAGGccgacAAGCguCGUGCUGccGCCGGCCGGCg -3' miRNA: 3'- -GUCC-----UUCG--GUACGAC--UGGCUGGUCGg -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 55941 | 0.7 | 0.391342 |
Target: 5'- uCAGGccgugcagcucgugcGCCAguUGCUGACCGGCUGcGCCg -3' miRNA: 3'- -GUCCuu-------------CGGU--ACGACUGGCUGGU-CGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 10412 | 0.7 | 0.431217 |
Target: 5'- -cGGAAGaCAgggGCUGACCGugAgCGGCCg -3' miRNA: 3'- guCCUUCgGUa--CGACUGGC--UgGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 55525 | 0.69 | 0.440827 |
Target: 5'- gAGGAcGCCcgGCUGACggCGGCCGcgacGCUa -3' miRNA: 3'- gUCCUuCGGuaCGACUG--GCUGGU----CGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 24796 | 0.69 | 0.440827 |
Target: 5'- gAGGAAuuccGCCGUGCUGcGCaGGCC-GCCg -3' miRNA: 3'- gUCCUU----CGGUACGAC-UGgCUGGuCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 9239 | 0.69 | 0.470363 |
Target: 5'- -cGGugcGGCCcUGCgaaGGgCGACCGGCCg -3' miRNA: 3'- guCCu--UCGGuACGa--CUgGCUGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 55078 | 0.69 | 0.480431 |
Target: 5'- aCGGGAuaCCG-GCgGGCCGcCCGGCCg -3' miRNA: 3'- -GUCCUucGGUaCGaCUGGCuGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 32418 | 0.69 | 0.480431 |
Target: 5'- --cGAAcGCCGUGCUGcuaucaagGCCGACCGcgagcGCCa -3' miRNA: 3'- gucCUU-CGGUACGAC--------UGGCUGGU-----CGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 48677 | 0.68 | 0.500874 |
Target: 5'- aCAGGcaugccGUCAUGCgUGcGCaCGGCCGGCCa -3' miRNA: 3'- -GUCCuu----CGGUACG-AC-UG-GCUGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 26521 | 0.68 | 0.500874 |
Target: 5'- uCAGGcuGGCCGUGCgGGCauuGGCC-GCCu -3' miRNA: 3'- -GUCCu-UCGGUACGaCUGg--CUGGuCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 56590 | 0.68 | 0.521692 |
Target: 5'- aCGGGAuGCgAU--UGACCGGCaCGGCCu -3' miRNA: 3'- -GUCCUuCGgUAcgACUGGCUG-GUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 16442 | 0.68 | 0.536462 |
Target: 5'- aCAGcGucGCCAUGCUcgacGCCGGgauuuggaccucggcCCAGCCg -3' miRNA: 3'- -GUC-CuuCGGUACGAc---UGGCU---------------GGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 45567 | 0.68 | 0.542836 |
Target: 5'- uCGGGucGCCGaugugaaGCUGGCCGGCguCGGCUu -3' miRNA: 3'- -GUCCuuCGGUa------CGACUGGCUG--GUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 20231 | 0.67 | 0.57505 |
Target: 5'- cCAGuGAAGCCGcGCagucgagcgUGAUCGAaUCGGCCg -3' miRNA: 3'- -GUC-CUUCGGUaCG---------ACUGGCU-GGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 4260 | 0.67 | 0.578298 |
Target: 5'- -cGGAAGCCAUucagcuccugcaaggGCUGAcgacucaucCCGuggucguguucgcGCCGGCCg -3' miRNA: 3'- guCCUUCGGUA---------------CGACU---------GGC-------------UGGUCGG- -5' |
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22583 | 5' | -56.5 | NC_005091.1 | + | 8221 | 0.67 | 0.585892 |
Target: 5'- aAGGAAGCggaCGUGCUGAUCGcgguACUGGgCg -3' miRNA: 3'- gUCCUUCG---GUACGACUGGC----UGGUCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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