miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22587 3' -54.8 NC_005091.1 + 51222 0.67 0.588469
Target:  5'- -uCGCCGCGCgucgcUGUGGgAAgCAACGAu -3'
miRNA:   3'- uuGCGGCGCGa----ACGCCgUUaGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 52158 0.66 0.678952
Target:  5'- --gGCCGCGCcaaUGCGGCGAauaucUCGAa-- -3'
miRNA:   3'- uugCGGCGCGa--ACGCCGUU-----AGUUguu -5'
22587 3' -54.8 NC_005091.1 + 53656 0.66 0.690169
Target:  5'- cGCGCCGgGgUUGCgcuGGCAAUggugCGACGAg -3'
miRNA:   3'- uUGCGGCgCgAACG---CCGUUA----GUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 13077 0.66 0.690169
Target:  5'- --aGCCGUgGCUgGCGGCAggCAAUAc -3'
miRNA:   3'- uugCGGCG-CGAaCGCCGUuaGUUGUu -5'
22587 3' -54.8 NC_005091.1 + 23308 0.74 0.247102
Target:  5'- cGCGCCGCGCUaccacaGCGGCAcgguaGUCGGCc- -3'
miRNA:   3'- uUGCGGCGCGAa-----CGCCGU-----UAGUUGuu -5'
22587 3' -54.8 NC_005091.1 + 47052 0.72 0.312413
Target:  5'- aGAUGCCGCGCUcGCGGU---CAGCGGg -3'
miRNA:   3'- -UUGCGGCGCGAaCGCCGuuaGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 25141 1.04 0.001808
Target:  5'- gAACGCCGCGCUUGCGGCAAUCAACAAa -3'
miRNA:   3'- -UUGCGGCGCGAACGCCGUUAGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 36496 0.78 0.138062
Target:  5'- aAGCGCCGUGCUgcgGCGGCcggaucgaagcgGAUCAGCGc -3'
miRNA:   3'- -UUGCGGCGCGAa--CGCCG------------UUAGUUGUu -5'
22587 3' -54.8 NC_005091.1 + 22827 0.75 0.210142
Target:  5'- gAACGCCGCGCUgacggccgGCGGCGG--AACGAg -3'
miRNA:   3'- -UUGCGGCGCGAa-------CGCCGUUagUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 51026 0.71 0.380792
Target:  5'- uGCGCacCGCGCUUGCGGUcgcugAcgCGGCAAa -3'
miRNA:   3'- uUGCG--GCGCGAACGCCG-----UuaGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 6680 0.68 0.554897
Target:  5'- gGACGCCGCGCgaGCGaucAUCGACu- -3'
miRNA:   3'- -UUGCGGCGCGaaCGCcguUAGUUGuu -5'
22587 3' -54.8 NC_005091.1 + 46275 0.68 0.554897
Target:  5'- cGAgGCCGCGCUcGUGGCcGUCGuACu- -3'
miRNA:   3'- -UUgCGGCGCGAaCGCCGuUAGU-UGuu -5'
22587 3' -54.8 NC_005091.1 + 21590 0.76 0.198376
Target:  5'- cGACGCgGCagagcacGCUUGCGGCGAUgAACGAu -3'
miRNA:   3'- -UUGCGgCG-------CGAACGCCGUUAgUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 7610 0.67 0.599749
Target:  5'- -cCGCCGUGCcgacCGGCGAuUCGACAGg -3'
miRNA:   3'- uuGCGGCGCGaac-GCCGUU-AGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 50266 0.66 0.667687
Target:  5'- cGCGaCCG-GCaUUGCGGCGAUCGucuCAGc -3'
miRNA:   3'- uUGC-GGCgCG-AACGCCGUUAGUu--GUU- -5'
22587 3' -54.8 NC_005091.1 + 1997 0.66 0.667687
Target:  5'- cGACGCUGuCGCggccaUGCuGGCGAaCGACGAa -3'
miRNA:   3'- -UUGCGGC-GCGa----ACG-CCGUUaGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 42187 0.66 0.666559
Target:  5'- -uCGCCuGCGUUcuuguugaauaccUGCGGCAuuUCAGCAc -3'
miRNA:   3'- uuGCGG-CGCGA-------------ACGCCGUu-AGUUGUu -5'
22587 3' -54.8 NC_005091.1 + 34772 0.67 0.633726
Target:  5'- --gGCCGCGCgcGuCGGCGAUCcGCu- -3'
miRNA:   3'- uugCGGCGCGaaC-GCCGUUAGuUGuu -5'
22587 3' -54.8 NC_005091.1 + 35228 0.7 0.458469
Target:  5'- cACGCCaGCGCg-GCGGCGAUUuucGCGAg -3'
miRNA:   3'- uUGCGG-CGCGaaCGCCGUUAGu--UGUU- -5'
22587 3' -54.8 NC_005091.1 + 22057 0.68 0.566034
Target:  5'- -cCGCUGCGCUUGaUGGUGAUCGuCGu -3'
miRNA:   3'- uuGCGGCGCGAAC-GCCGUUAGUuGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.