Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22589 | 3' | -59.5 | NC_005091.1 | + | 15380 | 0.67 | 0.434417 |
Target: 5'- aGCcaGCGaAGCUGAUCGuCGCUCGUgGUGg -3' miRNA: 3'- -CGc-CGC-UCGACUAGC-GCGAGCGgUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 52875 | 0.68 | 0.425176 |
Target: 5'- cGCGuGCGGcCUGAUCGC---CGCCGCGu -3' miRNA: 3'- -CGC-CGCUcGACUAGCGcgaGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 43206 | 0.68 | 0.407052 |
Target: 5'- aGCGGcCGAGaaaauuAUCGCcccGCUCGUCGCGa -3' miRNA: 3'- -CGCC-GCUCgac---UAGCG---CGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 21167 | 0.68 | 0.398174 |
Target: 5'- cCGGuUGAGCUGGUCGUcugcgcuugaacGCUCGaCGCGc -3' miRNA: 3'- cGCC-GCUCGACUAGCG------------CGAGCgGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 44340 | 0.68 | 0.398174 |
Target: 5'- aGCGcauCGAGaUUGAUCGCGUguUCGCuCACGu -3' miRNA: 3'- -CGCc--GCUC-GACUAGCGCG--AGCG-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 25721 | 0.68 | 0.398174 |
Target: 5'- cGCGGCcAGCUcggcGAUCG-GCUgccCGCCGCa -3' miRNA: 3'- -CGCCGcUCGA----CUAGCgCGA---GCGGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 42529 | 0.68 | 0.395535 |
Target: 5'- cGCGGCaaccGGCguaGAugguguuuucgaucUCGCGCUCGCCGa- -3' miRNA: 3'- -CGCCGc---UCGa--CU--------------AGCGCGAGCGGUgc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 9071 | 0.68 | 0.38942 |
Target: 5'- aCaGCGGGCUuuucuguacGA-CGCGCUCGCCGgGa -3' miRNA: 3'- cGcCGCUCGA---------CUaGCGCGAGCGGUgC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 30517 | 0.68 | 0.380794 |
Target: 5'- aGCGGCGcGCUc--UGCGUcaugagcaUCGCCACGg -3' miRNA: 3'- -CGCCGCuCGAcuaGCGCG--------AGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 28425 | 0.69 | 0.372296 |
Target: 5'- aGUGGuCGAGC--AUCGUGCUgGCgACGg -3' miRNA: 3'- -CGCC-GCUCGacUAGCGCGAgCGgUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 52943 | 0.69 | 0.363099 |
Target: 5'- gGCGaacgaacGCGAGCaGccguUCGCcauGCUCGCCGCGa -3' miRNA: 3'- -CGC-------CGCUCGaCu---AGCG---CGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 12467 | 0.69 | 0.329452 |
Target: 5'- gGCGGcCGuAGUcgccgccgucgcacUGGcCGCGCUCGUCGCGg -3' miRNA: 3'- -CGCC-GC-UCG--------------ACUaGCGCGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 32129 | 0.7 | 0.324072 |
Target: 5'- gGCGGCaacguGCUGcUCGCgucGCUCGCCAa- -3' miRNA: 3'- -CGCCGcu---CGACuAGCG---CGAGCGGUgc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 36536 | 0.7 | 0.324072 |
Target: 5'- uGCGGCGAcGCUGuAUCGUGCgccgauaccgUGCgCAUGg -3' miRNA: 3'- -CGCCGCU-CGAC-UAGCGCGa---------GCG-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 24317 | 0.7 | 0.324072 |
Target: 5'- cGCGGCGAuagGCUGGccgucgaccgUCGUGC-CGCCGa- -3' miRNA: 3'- -CGCCGCU---CGACU----------AGCGCGaGCGGUgc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 8226 | 0.7 | 0.316502 |
Target: 5'- aGCGGaCGuGCUGAUCGCGgUacuggGCgGCGu -3' miRNA: 3'- -CGCC-GCuCGACUAGCGCgAg----CGgUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 52027 | 0.7 | 0.294594 |
Target: 5'- cGgGGCGAGCgUGAcuuccucaaUCGCGagauacgCGCCGCGc -3' miRNA: 3'- -CgCCGCUCG-ACU---------AGCGCga-----GCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 49508 | 0.71 | 0.273887 |
Target: 5'- aGCGGCaGGCaGAaCGCGC-CaGCCACGg -3' miRNA: 3'- -CGCCGcUCGaCUaGCGCGaG-CGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 9266 | 0.71 | 0.267248 |
Target: 5'- cCGGCGAa-UGGUCGacuGCUCGCCGCu -3' miRNA: 3'- cGCCGCUcgACUAGCg--CGAGCGGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 28868 | 0.71 | 0.267248 |
Target: 5'- uCGGCGAaCUGAUCGCcauugacaGCUCGUCGgGg -3' miRNA: 3'- cGCCGCUcGACUAGCG--------CGAGCGGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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