miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 15380 0.67 0.434417
Target:  5'- aGCcaGCGaAGCUGAUCGuCGCUCGUgGUGg -3'
miRNA:   3'- -CGc-CGC-UCGACUAGC-GCGAGCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 52875 0.68 0.425176
Target:  5'- cGCGuGCGGcCUGAUCGC---CGCCGCGu -3'
miRNA:   3'- -CGC-CGCUcGACUAGCGcgaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 43206 0.68 0.407052
Target:  5'- aGCGGcCGAGaaaauuAUCGCcccGCUCGUCGCGa -3'
miRNA:   3'- -CGCC-GCUCgac---UAGCG---CGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 25721 0.68 0.398174
Target:  5'- cGCGGCcAGCUcggcGAUCG-GCUgccCGCCGCa -3'
miRNA:   3'- -CGCCGcUCGA----CUAGCgCGA---GCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 21167 0.68 0.398174
Target:  5'- cCGGuUGAGCUGGUCGUcugcgcuugaacGCUCGaCGCGc -3'
miRNA:   3'- cGCC-GCUCGACUAGCG------------CGAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 44340 0.68 0.398174
Target:  5'- aGCGcauCGAGaUUGAUCGCGUguUCGCuCACGu -3'
miRNA:   3'- -CGCc--GCUC-GACUAGCGCG--AGCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 42529 0.68 0.395535
Target:  5'- cGCGGCaaccGGCguaGAugguguuuucgaucUCGCGCUCGCCGa- -3'
miRNA:   3'- -CGCCGc---UCGa--CU--------------AGCGCGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 9071 0.68 0.38942
Target:  5'- aCaGCGGGCUuuucuguacGA-CGCGCUCGCCGgGa -3'
miRNA:   3'- cGcCGCUCGA---------CUaGCGCGAGCGGUgC- -5'
22589 3' -59.5 NC_005091.1 + 30517 0.68 0.380794
Target:  5'- aGCGGCGcGCUc--UGCGUcaugagcaUCGCCACGg -3'
miRNA:   3'- -CGCCGCuCGAcuaGCGCG--------AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 28425 0.69 0.372296
Target:  5'- aGUGGuCGAGC--AUCGUGCUgGCgACGg -3'
miRNA:   3'- -CGCC-GCUCGacUAGCGCGAgCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 52943 0.69 0.363099
Target:  5'- gGCGaacgaacGCGAGCaGccguUCGCcauGCUCGCCGCGa -3'
miRNA:   3'- -CGC-------CGCUCGaCu---AGCG---CGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 12467 0.69 0.329452
Target:  5'- gGCGGcCGuAGUcgccgccgucgcacUGGcCGCGCUCGUCGCGg -3'
miRNA:   3'- -CGCC-GC-UCG--------------ACUaGCGCGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 36536 0.7 0.324072
Target:  5'- uGCGGCGAcGCUGuAUCGUGCgccgauaccgUGCgCAUGg -3'
miRNA:   3'- -CGCCGCU-CGAC-UAGCGCGa---------GCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 32129 0.7 0.324072
Target:  5'- gGCGGCaacguGCUGcUCGCgucGCUCGCCAa- -3'
miRNA:   3'- -CGCCGcu---CGACuAGCG---CGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 24317 0.7 0.324072
Target:  5'- cGCGGCGAuagGCUGGccgucgaccgUCGUGC-CGCCGa- -3'
miRNA:   3'- -CGCCGCU---CGACU----------AGCGCGaGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 8226 0.7 0.316502
Target:  5'- aGCGGaCGuGCUGAUCGCGgUacuggGCgGCGu -3'
miRNA:   3'- -CGCC-GCuCGACUAGCGCgAg----CGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 52027 0.7 0.294594
Target:  5'- cGgGGCGAGCgUGAcuuccucaaUCGCGagauacgCGCCGCGc -3'
miRNA:   3'- -CgCCGCUCG-ACU---------AGCGCga-----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 49508 0.71 0.273887
Target:  5'- aGCGGCaGGCaGAaCGCGC-CaGCCACGg -3'
miRNA:   3'- -CGCCGcUCGaCUaGCGCGaG-CGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 28868 0.71 0.267248
Target:  5'- uCGGCGAaCUGAUCGCcauugacaGCUCGUCGgGg -3'
miRNA:   3'- cGCCGCUcGACUAGCG--------CGAGCGGUgC- -5'
22589 3' -59.5 NC_005091.1 + 9266 0.71 0.267248
Target:  5'- cCGGCGAa-UGGUCGacuGCUCGCCGCu -3'
miRNA:   3'- cGCCGCUcgACUAGCg--CGAGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.