miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 26123 1.11 0.000315
Target:  5'- cGCGGCGAGCUGAUCGCGCUCGCCACGg -3'
miRNA:   3'- -CGCCGCUCGACUAGCGCGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 26325 0.67 0.4725
Target:  5'- cUGGCGGcCUGcUCGCGCccggcCGCUACGa -3'
miRNA:   3'- cGCCGCUcGACuAGCGCGa----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 27612 0.73 0.202598
Target:  5'- cUGGuCGGGaagaUGAUCGCGCUCGCgUGCGa -3'
miRNA:   3'- cGCC-GCUCg---ACUAGCGCGAGCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 28425 0.69 0.372296
Target:  5'- aGUGGuCGAGC--AUCGUGCUgGCgACGg -3'
miRNA:   3'- -CGCC-GCUCGacUAGCGCGAgCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 28868 0.71 0.267248
Target:  5'- uCGGCGAaCUGAUCGCcauugacaGCUCGUCGgGg -3'
miRNA:   3'- cGCCGCUcGACUAGCG--------CGAGCGGUgC- -5'
22589 3' -59.5 NC_005091.1 + 29855 0.66 0.512197
Target:  5'- aGUGGuCGGGUUGAgCGCGUUCcgGCCcugACGa -3'
miRNA:   3'- -CGCC-GCUCGACUaGCGCGAG--CGG---UGC- -5'
22589 3' -59.5 NC_005091.1 + 30517 0.68 0.380794
Target:  5'- aGCGGCGcGCUc--UGCGUcaugagcaUCGCCACGg -3'
miRNA:   3'- -CGCCGCuCGAcuaGCGCG--------AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 31023 0.67 0.443773
Target:  5'- aCGGUGAGCgccgGAUCGCGgC-CGaaguCCACGc -3'
miRNA:   3'- cGCCGCUCGa---CUAGCGC-GaGC----GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 32129 0.7 0.324072
Target:  5'- gGCGGCaacguGCUGcUCGCgucGCUCGCCAa- -3'
miRNA:   3'- -CGCCGcu---CGACuAGCG---CGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 33254 0.72 0.230124
Target:  5'- cGCGGCG-GCcGAUaaCGCGCUCGaaCACGa -3'
miRNA:   3'- -CGCCGCuCGaCUA--GCGCGAGCg-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 34949 0.66 0.522339
Target:  5'- gGCGGCG-GCggacuUGAagGCGCgUCGCgGCu -3'
miRNA:   3'- -CGCCGCuCG-----ACUagCGCG-AGCGgUGc -5'
22589 3' -59.5 NC_005091.1 + 36407 0.66 0.531532
Target:  5'- aCGGCGgaugacaAGCgGGUCG-GCaCGCCGCGa -3'
miRNA:   3'- cGCCGC-------UCGaCUAGCgCGaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 36536 0.7 0.324072
Target:  5'- uGCGGCGAcGCUGuAUCGUGCgccgauaccgUGCgCAUGg -3'
miRNA:   3'- -CGCCGCU-CGAC-UAGCGCGa---------GCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 42429 0.67 0.482284
Target:  5'- aCGGCGAGgaa---GCGCUCGCCGa- -3'
miRNA:   3'- cGCCGCUCgacuagCGCGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 42529 0.68 0.395535
Target:  5'- cGCGGCaaccGGCguaGAugguguuuucgaucUCGCGCUCGCCGa- -3'
miRNA:   3'- -CGCCGc---UCGa--CU--------------AGCGCGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 42630 0.67 0.442832
Target:  5'- uCGGCGAGCgcgaGAUCGaaaacaccaucuaCGCcggUUGCCGCGu -3'
miRNA:   3'- cGCCGCUCGa---CUAGC-------------GCG---AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 43206 0.68 0.407052
Target:  5'- aGCGGcCGAGaaaauuAUCGCcccGCUCGUCGCGa -3'
miRNA:   3'- -CGCC-GCUCgac---UAGCG---CGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 43988 0.66 0.516244
Target:  5'- cGgGGUGAGCUGGgagaaguagaCGCGCuucucgauaugcaggUCGCCGgGa -3'
miRNA:   3'- -CgCCGCUCGACUa---------GCGCG---------------AGCGGUgC- -5'
22589 3' -59.5 NC_005091.1 + 44340 0.68 0.398174
Target:  5'- aGCGcauCGAGaUUGAUCGCGUguUCGCuCACGu -3'
miRNA:   3'- -CGCc--GCUC-GACUAGCGCG--AGCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 45506 0.74 0.173382
Target:  5'- cGCaGGCGaAGUUGAagaCGUgGCUCGCCACGg -3'
miRNA:   3'- -CG-CCGC-UCGACUa--GCG-CGAGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.