miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 44 0.66 0.512197
Target:  5'- -gGGCGuuccuaucauggGGCUGAUUuccauucaagGCGUgCGCCACGg -3'
miRNA:   3'- cgCCGC------------UCGACUAG----------CGCGaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 401 0.73 0.207864
Target:  5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3'
miRNA:   3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 1084 0.67 0.476402
Target:  5'- cGCGGCaAGCUGAagcauaagucccggcUCGCGaUCGaCACGc -3'
miRNA:   3'- -CGCCGcUCGACU---------------AGCGCgAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 3920 0.67 0.486224
Target:  5'- uCGGCGcgaGGCau-UCGCGCUugcucucgaagcggcCGCCACGa -3'
miRNA:   3'- cGCCGC---UCGacuAGCGCGA---------------GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 6571 0.66 0.502137
Target:  5'- gGCGGCaccauGCgGAU-GCGUUCGCCAUc -3'
miRNA:   3'- -CGCCGcu---CGaCUAgCGCGAGCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 8226 0.7 0.316502
Target:  5'- aGCGGaCGuGCUGAUCGCGgUacuggGCgGCGu -3'
miRNA:   3'- -CGCC-GCuCGACUAGCGCgAg----CGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 9071 0.68 0.38942
Target:  5'- aCaGCGGGCUuuucuguacGA-CGCGCUCGCCGgGa -3'
miRNA:   3'- cGcCGCUCGA---------CUaGCGCGAGCGGUgC- -5'
22589 3' -59.5 NC_005091.1 + 9266 0.71 0.267248
Target:  5'- cCGGCGAa-UGGUCGacuGCUCGCCGCu -3'
miRNA:   3'- cGCCGCUcgACUAGCg--CGAGCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 12467 0.69 0.329452
Target:  5'- gGCGGcCGuAGUcgccgccgucgcacUGGcCGCGCUCGUCGCGg -3'
miRNA:   3'- -CGCC-GC-UCG--------------ACUaGCGCGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 15380 0.67 0.434417
Target:  5'- aGCcaGCGaAGCUGAUCGuCGCUCGUgGUGg -3'
miRNA:   3'- -CGc-CGC-UCGACUAGC-GCGAGCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 16364 0.67 0.443773
Target:  5'- cGCGGCcaAGCgacgugGAaCGUGCUCGgCGCGu -3'
miRNA:   3'- -CGCCGc-UCGa-----CUaGCGCGAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 18197 0.74 0.159384
Target:  5'- aCGGCGuGCcguucgacuucaGGUCGCGCaUCGCCACGc -3'
miRNA:   3'- cGCCGCuCGa-----------CUAGCGCG-AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 20339 0.66 0.530508
Target:  5'- aGCGGCGAcGCgucggccgauucGAUCaCGCUCGaCUGCGc -3'
miRNA:   3'- -CGCCGCU-CGa-----------CUAGcGCGAGC-GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 21167 0.68 0.398174
Target:  5'- cCGGuUGAGCUGGUCGUcugcgcuugaacGCUCGaCGCGc -3'
miRNA:   3'- cGCC-GCUCGACUAGCG------------CGAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 22761 0.66 0.492164
Target:  5'- cGCGGCGuucaGGC-GcgUGCGCUCGgCAuCGa -3'
miRNA:   3'- -CGCCGC----UCGaCuaGCGCGAGCgGU-GC- -5'
22589 3' -59.5 NC_005091.1 + 23328 0.79 0.079171
Target:  5'- uCGGCGAGCUGGuUUGCGaacgCGCCGCGc -3'
miRNA:   3'- cGCCGCUCGACU-AGCGCga--GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 24317 0.7 0.324072
Target:  5'- cGCGGCGAuagGCUGGccgucgaccgUCGUGC-CGCCGa- -3'
miRNA:   3'- -CGCCGCU---CGACU----------AGCGCGaGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 25632 0.8 0.068912
Target:  5'- uGCGGCGGGCagccGAUCGCcgaGCUgGCCGCGc -3'
miRNA:   3'- -CGCCGCUCGa---CUAGCG---CGAgCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 25721 0.68 0.398174
Target:  5'- cGCGGCcAGCUcggcGAUCG-GCUgccCGCCGCa -3'
miRNA:   3'- -CGCCGcUCGA----CUAGCgCGA---GCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 26039 0.8 0.068912
Target:  5'- cGUGGCGAGCgcGAUCa-GCUCGCCGCGc -3'
miRNA:   3'- -CGCCGCUCGa-CUAGcgCGAGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.