Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22589 | 3' | -59.5 | NC_005091.1 | + | 26123 | 1.11 | 0.000315 |
Target: 5'- cGCGGCGAGCUGAUCGCGCUCGCCACGg -3' miRNA: 3'- -CGCCGCUCGACUAGCGCGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 48714 | 0.81 | 0.052102 |
Target: 5'- cGCGGCGGGCUGcugCGUGUuggugUCGCCGCGu -3' miRNA: 3'- -CGCCGCUCGACua-GCGCG-----AGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 26039 | 0.8 | 0.068912 |
Target: 5'- cGUGGCGAGCgcGAUCa-GCUCGCCGCGc -3' miRNA: 3'- -CGCCGCUCGa-CUAGcgCGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 25632 | 0.8 | 0.068912 |
Target: 5'- uGCGGCGGGCagccGAUCGCcgaGCUgGCCGCGc -3' miRNA: 3'- -CGCCGCUCGa---CUAGCG---CGAgCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 23328 | 0.79 | 0.079171 |
Target: 5'- uCGGCGAGCUGGuUUGCGaacgCGCCGCGc -3' miRNA: 3'- cGCCGCUCGACU-AGCGCga--GCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 46041 | 0.78 | 0.093413 |
Target: 5'- aGCGGCGGGgaGAUCGauuacgacgaccCGUUCGCCGCc -3' miRNA: 3'- -CGCCGCUCgaCUAGC------------GCGAGCGGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 18197 | 0.74 | 0.159384 |
Target: 5'- aCGGCGuGCcguucgacuucaGGUCGCGCaUCGCCACGc -3' miRNA: 3'- cGCCGCuCGa-----------CUAGCGCG-AGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 45506 | 0.74 | 0.173382 |
Target: 5'- cGCaGGCGaAGUUGAagaCGUgGCUCGCCACGg -3' miRNA: 3'- -CG-CCGC-UCGACUa--GCG-CGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 53040 | 0.73 | 0.197447 |
Target: 5'- cGCGGCGAGCaUGGcgaacggcugcUCGCGUUCGuUCGCc -3' miRNA: 3'- -CGCCGCUCG-ACU-----------AGCGCGAGC-GGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 27612 | 0.73 | 0.202598 |
Target: 5'- cUGGuCGGGaagaUGAUCGCGCUCGCgUGCGa -3' miRNA: 3'- cGCC-GCUCg---ACUAGCGCGAGCG-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 401 | 0.73 | 0.207864 |
Target: 5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3' miRNA: 3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 57795 | 0.73 | 0.207864 |
Target: 5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3' miRNA: 3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 33254 | 0.72 | 0.230124 |
Target: 5'- cGCGGCG-GCcGAUaaCGCGCUCGaaCACGa -3' miRNA: 3'- -CGCCGCuCGaCUA--GCGCGAGCg-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 54926 | 0.71 | 0.248112 |
Target: 5'- uGCGGggauuuUGGGCUGAUgGCGC-CGCC-CGg -3' miRNA: 3'- -CGCC------GCUCGACUAgCGCGaGCGGuGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 9266 | 0.71 | 0.267248 |
Target: 5'- cCGGCGAa-UGGUCGacuGCUCGCCGCu -3' miRNA: 3'- cGCCGCUcgACUAGCg--CGAGCGGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 28868 | 0.71 | 0.267248 |
Target: 5'- uCGGCGAaCUGAUCGCcauugacaGCUCGUCGgGg -3' miRNA: 3'- cGCCGCUcGACUAGCG--------CGAGCGGUgC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 49508 | 0.71 | 0.273887 |
Target: 5'- aGCGGCaGGCaGAaCGCGC-CaGCCACGg -3' miRNA: 3'- -CGCCGcUCGaCUaGCGCGaG-CGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 52027 | 0.7 | 0.294594 |
Target: 5'- cGgGGCGAGCgUGAcuuccucaaUCGCGagauacgCGCCGCGc -3' miRNA: 3'- -CgCCGCUCG-ACU---------AGCGCga-----GCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 8226 | 0.7 | 0.316502 |
Target: 5'- aGCGGaCGuGCUGAUCGCGgUacuggGCgGCGu -3' miRNA: 3'- -CGCC-GCuCGACUAGCGCgAg----CGgUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 24317 | 0.7 | 0.324072 |
Target: 5'- cGCGGCGAuagGCUGGccgucgaccgUCGUGC-CGCCGa- -3' miRNA: 3'- -CGCCGCU---CGACU----------AGCGCGaGCGGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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