miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 26325 0.67 0.4725
Target:  5'- cUGGCGGcCUGcUCGCGCccggcCGCUACGa -3'
miRNA:   3'- cGCCGCUcGACuAGCGCGa----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 52943 0.69 0.363099
Target:  5'- gGCGaacgaacGCGAGCaGccguUCGCcauGCUCGCCGCGa -3'
miRNA:   3'- -CGC-------CGCUCGaCu---AGCG---CGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 28425 0.69 0.372296
Target:  5'- aGUGGuCGAGC--AUCGUGCUgGCgACGg -3'
miRNA:   3'- -CGCC-GCUCGacUAGCGCGAgCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 30517 0.68 0.380794
Target:  5'- aGCGGCGcGCUc--UGCGUcaugagcaUCGCCACGg -3'
miRNA:   3'- -CGCCGCuCGAcuaGCGCG--------AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 42529 0.68 0.395535
Target:  5'- cGCGGCaaccGGCguaGAugguguuuucgaucUCGCGCUCGCCGa- -3'
miRNA:   3'- -CGCCGc---UCGa--CU--------------AGCGCGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 44340 0.68 0.398174
Target:  5'- aGCGcauCGAGaUUGAUCGCGUguUCGCuCACGu -3'
miRNA:   3'- -CGCc--GCUC-GACUAGCGCG--AGCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 21167 0.68 0.398174
Target:  5'- cCGGuUGAGCUGGUCGUcugcgcuugaacGCUCGaCGCGc -3'
miRNA:   3'- cGCC-GCUCGACUAGCG------------CGAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 15380 0.67 0.434417
Target:  5'- aGCcaGCGaAGCUGAUCGuCGCUCGUgGUGg -3'
miRNA:   3'- -CGc-CGC-UCGACUAGC-GCGAGCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 31023 0.67 0.443773
Target:  5'- aCGGUGAGCgccgGAUCGCGgC-CGaaguCCACGc -3'
miRNA:   3'- cGCCGCUCGa---CUAGCGC-GaGC----GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 24317 0.7 0.324072
Target:  5'- cGCGGCGAuagGCUGGccgucgaccgUCGUGC-CGCCGa- -3'
miRNA:   3'- -CGCCGCU---CGACU----------AGCGCGaGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 8226 0.7 0.316502
Target:  5'- aGCGGaCGuGCUGAUCGCGgUacuggGCgGCGu -3'
miRNA:   3'- -CGCC-GCuCGACUAGCGCgAg----CGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 52027 0.7 0.294594
Target:  5'- cGgGGCGAGCgUGAcuuccucaaUCGCGagauacgCGCCGCGc -3'
miRNA:   3'- -CgCCGCUCG-ACU---------AGCGCga-----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 26039 0.8 0.068912
Target:  5'- cGUGGCGAGCgcGAUCa-GCUCGCCGCGc -3'
miRNA:   3'- -CGCCGCUCGa-CUAGcgCGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 46041 0.78 0.093413
Target:  5'- aGCGGCGGGgaGAUCGauuacgacgaccCGUUCGCCGCc -3'
miRNA:   3'- -CGCCGCUCgaCUAGC------------GCGAGCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 18197 0.74 0.159384
Target:  5'- aCGGCGuGCcguucgacuucaGGUCGCGCaUCGCCACGc -3'
miRNA:   3'- cGCCGCuCGa-----------CUAGCGCG-AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 45506 0.74 0.173382
Target:  5'- cGCaGGCGaAGUUGAagaCGUgGCUCGCCACGg -3'
miRNA:   3'- -CG-CCGC-UCGACUa--GCG-CGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 401 0.73 0.207864
Target:  5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3'
miRNA:   3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 57795 0.73 0.207864
Target:  5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3'
miRNA:   3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 9266 0.71 0.267248
Target:  5'- cCGGCGAa-UGGUCGacuGCUCGCCGCu -3'
miRNA:   3'- cGCCGCUcgACUAGCg--CGAGCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 49508 0.71 0.273887
Target:  5'- aGCGGCaGGCaGAaCGCGC-CaGCCACGg -3'
miRNA:   3'- -CGCCGcUCGaCUaGCGCGaG-CGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.