miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 46041 0.78 0.093413
Target:  5'- aGCGGCGGGgaGAUCGauuacgacgaccCGUUCGCCGCc -3'
miRNA:   3'- -CGCCGCUCgaCUAGC------------GCGAGCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 48714 0.81 0.052102
Target:  5'- cGCGGCGGGCUGcugCGUGUuggugUCGCCGCGu -3'
miRNA:   3'- -CGCCGCUCGACua-GCGCG-----AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 49508 0.71 0.273887
Target:  5'- aGCGGCaGGCaGAaCGCGC-CaGCCACGg -3'
miRNA:   3'- -CGCCGcUCGaCUaGCGCGaG-CGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 49550 0.66 0.532557
Target:  5'- uUGGCcuGCUcGUCGCGCUcgugCGCUACGu -3'
miRNA:   3'- cGCCGcuCGAcUAGCGCGA----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 51672 0.66 0.501135
Target:  5'- -gGGCGAGC-GAUcaucgcgucauaCGCGCUCGUaucguaaCGCGg -3'
miRNA:   3'- cgCCGCUCGaCUA------------GCGCGAGCG-------GUGC- -5'
22589 3' -59.5 NC_005091.1 + 52027 0.7 0.294594
Target:  5'- cGgGGCGAGCgUGAcuuccucaaUCGCGagauacgCGCCGCGc -3'
miRNA:   3'- -CgCCGCUCG-ACU---------AGCGCga-----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 52875 0.68 0.425176
Target:  5'- cGCGuGCGGcCUGAUCGC---CGCCGCGu -3'
miRNA:   3'- -CGC-CGCUcGACUAGCGcgaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 52943 0.69 0.363099
Target:  5'- gGCGaacgaacGCGAGCaGccguUCGCcauGCUCGCCGCGa -3'
miRNA:   3'- -CGC-------CGCUCGaCu---AGCG---CGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 53040 0.73 0.197447
Target:  5'- cGCGGCGAGCaUGGcgaacggcugcUCGCGUUCGuUCGCc -3'
miRNA:   3'- -CGCCGCUCG-ACU-----------AGCGCGAGC-GGUGc -5'
22589 3' -59.5 NC_005091.1 + 54926 0.71 0.248112
Target:  5'- uGCGGggauuuUGGGCUGAUgGCGC-CGCC-CGg -3'
miRNA:   3'- -CGCC------GCUCGACUAgCGCGaGCGGuGC- -5'
22589 3' -59.5 NC_005091.1 + 57177 0.66 0.502137
Target:  5'- gGCGGCGAagacGCUGuUCaaCGUUCGgCCAUGg -3'
miRNA:   3'- -CGCCGCU----CGACuAGc-GCGAGC-GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 57212 0.67 0.482284
Target:  5'- gGCGGCGAgucgcggaaGCUGGcguUCGauauacagcCGCUCGgCCGCa -3'
miRNA:   3'- -CGCCGCU---------CGACU---AGC---------GCGAGC-GGUGc -5'
22589 3' -59.5 NC_005091.1 + 57438 0.66 0.512197
Target:  5'- -gGGCGuuccuaucauggGGCUGAUUuccauucaagGCGUgCGCCACGg -3'
miRNA:   3'- cgCCGC------------UCGACUAG----------CGCGaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 57795 0.73 0.207864
Target:  5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3'
miRNA:   3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.