miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 3' -54.2 NC_005091.1 + 33920 0.66 0.786716
Target:  5'- gUGCcGGGAaACAAUGCGGAAucuucGCGcCGu -3'
miRNA:   3'- -ACGuUCCUgUGUUACGCCUU-----CGCcGC- -5'
22590 3' -54.2 NC_005091.1 + 37854 0.66 0.786716
Target:  5'- cGcCAAGGACACccgaucuacaaAGUgGCcGAGGCGGCc -3'
miRNA:   3'- aC-GUUCCUGUG-----------UUA-CGcCUUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 36300 0.66 0.776654
Target:  5'- -----aGACGCAAUGCGcGAGcgucGCGGCGu -3'
miRNA:   3'- acguucCUGUGUUACGC-CUU----CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 26855 0.66 0.776654
Target:  5'- gGCGAaGACGCGAgcCGGu-GCGGCGu -3'
miRNA:   3'- aCGUUcCUGUGUUacGCCuuCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 20374 0.66 0.766438
Target:  5'- uUGCGAcGaacaucGCGCAcgGCGGcuacucgcaAAGCGGCGa -3'
miRNA:   3'- -ACGUUcC------UGUGUuaCGCC---------UUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 41194 0.66 0.756081
Target:  5'- -aCAAGGACGaacCGGUGCugacGggGCGGUGc -3'
miRNA:   3'- acGUUCCUGU---GUUACGc---CuuCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 12375 0.66 0.756081
Target:  5'- aGCGcGG-C-CAGUGCGacGGCGGCGa -3'
miRNA:   3'- aCGUuCCuGuGUUACGCcuUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 49173 0.66 0.756081
Target:  5'- gGCGAGuuGAUACcaguacccaccGAUGCGGAugacguGCGGCu -3'
miRNA:   3'- aCGUUC--CUGUG-----------UUACGCCUu-----CGCCGc -5'
22590 3' -54.2 NC_005091.1 + 35088 0.67 0.72428
Target:  5'- cGCAAugcGGugAC--UGCGGcccguGCGGCGg -3'
miRNA:   3'- aCGUU---CCugUGuuACGCCuu---CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 6748 0.67 0.713475
Target:  5'- aGCAGcccGGCACGGUcGCGGAAGUcccGGUGu -3'
miRNA:   3'- aCGUUc--CUGUGUUA-CGCCUUCG---CCGC- -5'
22590 3' -54.2 NC_005091.1 + 51611 0.67 0.702589
Target:  5'- gGCAcGGGCGCGAuucggcaugauaUGCcgaauGAAGCGGCu -3'
miRNA:   3'- aCGUuCCUGUGUU------------ACGc----CUUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 19064 0.67 0.702589
Target:  5'- gGCGGGGACAagaa--GGAgGGCGGCa -3'
miRNA:   3'- aCGUUCCUGUguuacgCCU-UCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 57221 0.67 0.702589
Target:  5'- aGCcagucGGGCgGCGAgucGCGGAAGCuGGCGu -3'
miRNA:   3'- aCGuu---CCUG-UGUUa--CGCCUUCG-CCGC- -5'
22590 3' -54.2 NC_005091.1 + 10252 0.67 0.679512
Target:  5'- cGCAggcAGGACACGcgcacaucaggaaGUGCGGcgcuCGGCGc -3'
miRNA:   3'- aCGU---UCCUGUGU-------------UACGCCuuc-GCCGC- -5'
22590 3' -54.2 NC_005091.1 + 10722 0.68 0.64733
Target:  5'- cGCAAGcACcCGAUGaaGGAGUGGCGg -3'
miRNA:   3'- aCGUUCcUGuGUUACgcCUUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 53071 0.68 0.64733
Target:  5'- gUGCGccGGuCAUggUGCGGGGuucgcugaucGCGGCGa -3'
miRNA:   3'- -ACGUu-CCuGUGuuACGCCUU----------CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 32159 0.68 0.64733
Target:  5'- gGCAAGGGCaACGAaGCuGAaggcaagaagGGCGGCa -3'
miRNA:   3'- aCGUUCCUG-UGUUaCGcCU----------UCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 14954 0.68 0.62505
Target:  5'- aUGCGAaccaccGGAUggcccaugACAG-GCGGGAGCGGUGu -3'
miRNA:   3'- -ACGUU------CCUG--------UGUUaCGCCUUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 15073 0.69 0.580643
Target:  5'- aUGCGAaccaccGGAUGCGcccaugacagGCGGGAGCGGUGu -3'
miRNA:   3'- -ACGUU------CCUGUGUua--------CGCCUUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 14834 0.69 0.580643
Target:  5'- aUGCGAaccaccGGAUGCGcccaugacagGCGGGAGCGGUGu -3'
miRNA:   3'- -ACGUU------CCUGUGUua--------CGCCUUCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.