miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22623 3' -57 NC_005091.1 + 23440 0.65 0.644879
Target:  5'- cGCCaUGaucugcaugaugacGCUCGCcaucuGGCGCAGgaacUGCGCAg -3'
miRNA:   3'- -CGG-AC--------------UGAGCGuu---CCGCGUU----GCGCGU- -5'
22623 3' -57 NC_005091.1 + 33443 0.66 0.626328
Target:  5'- aGCgCUcGCUCgGCGAcGGaCGCGACGCaGCAa -3'
miRNA:   3'- -CG-GAcUGAG-CGUU-CC-GCGUUGCG-CGU- -5'
22623 3' -57 NC_005091.1 + 53146 0.66 0.61542
Target:  5'- cGCgCUGuCUCGCGugauuccGCuGUAGCGCGCGg -3'
miRNA:   3'- -CG-GACuGAGCGUuc-----CG-CGUUGCGCGU- -5'
22623 3' -57 NC_005091.1 + 3513 0.66 0.604526
Target:  5'- cGCUUcAUUCGCAAGGCGUcuCGCu-- -3'
miRNA:   3'- -CGGAcUGAGCGUUCCGCGuuGCGcgu -5'
22623 3' -57 NC_005091.1 + 36575 0.66 0.604526
Target:  5'- gGCCgaGAaucccCUUGCAuggGGGCGCuuCGUGCGg -3'
miRNA:   3'- -CGGa-CU-----GAGCGU---UCCGCGuuGCGCGU- -5'
22623 3' -57 NC_005091.1 + 53768 0.66 0.593656
Target:  5'- uGCCgaaacGGUUUGCGAGcauugccgaGCGCAACGCGUAc -3'
miRNA:   3'- -CGGa----CUGAGCGUUC---------CGCGUUGCGCGU- -5'
22623 3' -57 NC_005091.1 + 9511 0.67 0.582817
Target:  5'- gGUCgUGGCacaUCGCGAGGCcgGCAGC-CGCGa -3'
miRNA:   3'- -CGG-ACUG---AGCGUUCCG--CGUUGcGCGU- -5'
22623 3' -57 NC_005091.1 + 21195 0.67 0.572019
Target:  5'- cGCCcaUGG-UCGCAGGuauGCGCGGCGCGa- -3'
miRNA:   3'- -CGG--ACUgAGCGUUC---CGCGUUGCGCgu -5'
22623 3' -57 NC_005091.1 + 9727 0.67 0.572019
Target:  5'- aGCCUgccagaggcGAUUCuGCGGGuuCGCAAUGCGCAu -3'
miRNA:   3'- -CGGA---------CUGAG-CGUUCc-GCGUUGCGCGU- -5'
22623 3' -57 NC_005091.1 + 45788 0.67 0.561269
Target:  5'- aGCC-GGCgcggCGCGcGGC-CGACGCGUAc -3'
miRNA:   3'- -CGGaCUGa---GCGUuCCGcGUUGCGCGU- -5'
22623 3' -57 NC_005091.1 + 20351 0.67 0.561269
Target:  5'- gGCU--ACUCGCAAaGCgGCGACGCGUc -3'
miRNA:   3'- -CGGacUGAGCGUUcCG-CGUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 51422 0.67 0.550575
Target:  5'- cCCg----CGCAAGGCGUucCGCGCAc -3'
miRNA:   3'- cGGacugaGCGUUCCGCGuuGCGCGU- -5'
22623 3' -57 NC_005091.1 + 26091 0.67 0.547379
Target:  5'- cGUC-GGCgUGCAGGGCGCGAUuaaccuugcggcggGCGCAc -3'
miRNA:   3'- -CGGaCUGaGCGUUCCGCGUUG--------------CGCGU- -5'
22623 3' -57 NC_005091.1 + 29756 0.67 0.539944
Target:  5'- uUCUGGucCUCGuCAGGGcCGgAACGCGCu -3'
miRNA:   3'- cGGACU--GAGC-GUUCC-GCgUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 50937 0.68 0.508501
Target:  5'- uGCCgcgucagcGAC-CGCAA-GCGCggUGCGCAc -3'
miRNA:   3'- -CGGa-------CUGaGCGUUcCGCGuuGCGCGU- -5'
22623 3' -57 NC_005091.1 + 26556 0.68 0.498189
Target:  5'- uCCUGACcCGCcuu-CGCGACGCGCu -3'
miRNA:   3'- cGGACUGaGCGuuccGCGUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 35239 0.68 0.477855
Target:  5'- uGCCggcaguacCUCGCGGcGGCGCcgcGACGCGUAc -3'
miRNA:   3'- -CGGacu-----GAGCGUU-CCGCG---UUGCGCGU- -5'
22623 3' -57 NC_005091.1 + 18309 0.68 0.477855
Target:  5'- uGCC-GAcCUCGCGAuGCGCGugGCGa- -3'
miRNA:   3'- -CGGaCU-GAGCGUUcCGCGUugCGCgu -5'
22623 3' -57 NC_005091.1 + 22119 0.69 0.457939
Target:  5'- gGCCgcauggGACggcaGCcaaaAAGGCGUGACGCGCc -3'
miRNA:   3'- -CGGa-----CUGag--CG----UUCCGCGUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 52034 0.69 0.457939
Target:  5'- aGCgUGACuuccucaaUCGCGAGauacGCGCcGCGCGCu -3'
miRNA:   3'- -CGgACUG--------AGCGUUC----CGCGuUGCGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.