miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22646 5' -59.1 NC_005091.1 + 40647 0.66 0.48986
Target:  5'- --cCGGCCGUGCUcg-GCG-CGGGAUa -3'
miRNA:   3'- uauGCCGGCGCGGuuaCGCcGCCUUA- -5'
22646 5' -59.1 NC_005091.1 + 25617 0.66 0.479731
Target:  5'- -cGCGaaaaGCGCgAAUGCGGCGGGc- -3'
miRNA:   3'- uaUGCcgg-CGCGgUUACGCCGCCUua -5'
22646 5' -59.1 NC_005091.1 + 44582 0.66 0.479731
Target:  5'- --uCGGCCGCGUCGuacGUGGCGucGAAg -3'
miRNA:   3'- uauGCCGGCGCGGUua-CGCCGC--CUUa -5'
22646 5' -59.1 NC_005091.1 + 52384 0.66 0.479731
Target:  5'- -cGCGGauguuCGCGagAcgGCGGCGGAAg -3'
miRNA:   3'- uaUGCCg----GCGCggUuaCGCCGCCUUa -5'
22646 5' -59.1 NC_005091.1 + 12143 0.66 0.478724
Target:  5'- -gAUGGCgaucgggacgaagCGCGCguAcUGCGGCGGGAUc -3'
miRNA:   3'- uaUGCCG-------------GCGCGguU-ACGCCGCCUUA- -5'
22646 5' -59.1 NC_005091.1 + 6175 0.66 0.459788
Target:  5'- uUGCGGgCGacgaGCCGAaGCGGCGcGAc- -3'
miRNA:   3'- uAUGCCgGCg---CGGUUaCGCCGC-CUua -5'
22646 5' -59.1 NC_005091.1 + 25248 0.66 0.449983
Target:  5'- -aGCGGCCuuCGCUAugGCGGCGGu-- -3'
miRNA:   3'- uaUGCCGGc-GCGGUuaCGCCGCCuua -5'
22646 5' -59.1 NC_005091.1 + 22265 0.67 0.440294
Target:  5'- -cACGGCCGCcagcaaaauGCCGAccUGC-GCGGAu- -3'
miRNA:   3'- uaUGCCGGCG---------CGGUU--ACGcCGCCUua -5'
22646 5' -59.1 NC_005091.1 + 21387 0.67 0.440294
Target:  5'- -gGCGGCCuCGCguAcGCGGCGGc-- -3'
miRNA:   3'- uaUGCCGGcGCGguUaCGCCGCCuua -5'
22646 5' -59.1 NC_005091.1 + 54728 0.67 0.440294
Target:  5'- -aGgGGCCGgGCCAAaGCGGCa---- -3'
miRNA:   3'- uaUgCCGGCgCGGUUaCGCCGccuua -5'
22646 5' -59.1 NC_005091.1 + 13328 0.67 0.430725
Target:  5'- gAUGCGGCCaacaaguucguuGCGCgGAUcGCGGCGcAAUg -3'
miRNA:   3'- -UAUGCCGG------------CGCGgUUA-CGCCGCcUUA- -5'
22646 5' -59.1 NC_005091.1 + 17941 0.67 0.421279
Target:  5'- -gACGGCCgGCGCgAcggguGUGCguucGGCGGGAc -3'
miRNA:   3'- uaUGCCGG-CGCGgU-----UACG----CCGCCUUa -5'
22646 5' -59.1 NC_005091.1 + 44833 0.67 0.402768
Target:  5'- -gGCGGCCG-GCaaggGCGGCGGcAAg -3'
miRNA:   3'- uaUGCCGGCgCGguuaCGCCGCC-UUa -5'
22646 5' -59.1 NC_005091.1 + 51547 0.67 0.402768
Target:  5'- -cGCGGCauCGCCaAGUG-GGCGGAAg -3'
miRNA:   3'- uaUGCCGgcGCGG-UUACgCCGCCUUa -5'
22646 5' -59.1 NC_005091.1 + 12377 0.68 0.367333
Target:  5'- -cGCGGCCaGUGCgAcgGCGGCGa--- -3'
miRNA:   3'- uaUGCCGG-CGCGgUuaCGCCGCcuua -5'
22646 5' -59.1 NC_005091.1 + 55799 0.68 0.358816
Target:  5'- cUGCGGCUGCGCCGAcUGCu-CGGGc- -3'
miRNA:   3'- uAUGCCGGCGCGGUU-ACGccGCCUua -5'
22646 5' -59.1 NC_005091.1 + 14115 0.68 0.358816
Target:  5'- -cGCGGCUGCGaCCGAccaguacaCGGCGGAu- -3'
miRNA:   3'- uaUGCCGGCGC-GGUUac------GCCGCCUua -5'
22646 5' -59.1 NC_005091.1 + 49042 0.68 0.3422
Target:  5'- cUGCGGgCGCGCUGcugcgcaccguGUGCGGgCGGGGc -3'
miRNA:   3'- uAUGCCgGCGCGGU-----------UACGCC-GCCUUa -5'
22646 5' -59.1 NC_005091.1 + 36501 0.68 0.3422
Target:  5'- -cAUGGaaGCGCCGugcUGCGGCGGc-- -3'
miRNA:   3'- uaUGCCggCGCGGUu--ACGCCGCCuua -5'
22646 5' -59.1 NC_005091.1 + 52116 0.69 0.310658
Target:  5'- -gGCGGCCGuCGCCGGcGCGgggcgcguuGCGGAc- -3'
miRNA:   3'- uaUGCCGGC-GCGGUUaCGC---------CGCCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.