miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 3' -54 NC_005091.1 + 22748 0.67 0.74216
Target:  5'- -cGCcg-GCCGucAGCGCGgcguucagGCGCGUGCg -3'
miRNA:   3'- cuCGuaaCGGC--UCGCGU--------UGCGCAUGg -5'
22648 3' -54 NC_005091.1 + 46618 0.67 0.74216
Target:  5'- cGAGCAgcGuuGAGCGgaaGGgGCGaGCCg -3'
miRNA:   3'- -CUCGUaaCggCUCGCg--UUgCGCaUGG- -5'
22648 3' -54 NC_005091.1 + 26409 0.67 0.73155
Target:  5'- uAGCg--GCCGGGCGCGA-GCagGCCg -3'
miRNA:   3'- cUCGuaaCGGCUCGCGUUgCGcaUGG- -5'
22648 3' -54 NC_005091.1 + 5627 0.67 0.72084
Target:  5'- cGGUAUUGaCGAGCGuCAGgGCcUGCCu -3'
miRNA:   3'- cUCGUAACgGCUCGC-GUUgCGcAUGG- -5'
22648 3' -54 NC_005091.1 + 48715 0.67 0.719763
Target:  5'- cGGCAcUGCaCGAGCGaCAcggagauacggccAUGCGUugCg -3'
miRNA:   3'- cUCGUaACG-GCUCGC-GU-------------UGCGCAugG- -5'
22648 3' -54 NC_005091.1 + 34552 0.67 0.710039
Target:  5'- uGGCGacUGCCGAGUGgGaccGCGCGgcgaACCg -3'
miRNA:   3'- cUCGUa-ACGGCUCGCgU---UGCGCa---UGG- -5'
22648 3' -54 NC_005091.1 + 54269 0.67 0.708955
Target:  5'- -cGCGUUGCCGAucGCGCGGucuuccugauggcCGCaGUaGCCg -3'
miRNA:   3'- cuCGUAACGGCU--CGCGUU-------------GCG-CA-UGG- -5'
22648 3' -54 NC_005091.1 + 5657 0.67 0.69916
Target:  5'- cAGCAU-GCuCGucCGCAACGUGaUACCg -3'
miRNA:   3'- cUCGUAaCG-GCucGCGUUGCGC-AUGG- -5'
22648 3' -54 NC_005091.1 + 49784 0.67 0.69916
Target:  5'- -uGCAgaGCUacGCGCAAUGCGUcgACCg -3'
miRNA:   3'- cuCGUaaCGGcuCGCGUUGCGCA--UGG- -5'
22648 3' -54 NC_005091.1 + 49464 0.68 0.688216
Target:  5'- -cGUAgcGCaCGAGCGCGACGagcagGCCa -3'
miRNA:   3'- cuCGUaaCG-GCUCGCGUUGCgca--UGG- -5'
22648 3' -54 NC_005091.1 + 30342 0.68 0.688216
Target:  5'- cGAGCAUcUGCaCGAGCGCcACGgGa--- -3'
miRNA:   3'- -CUCGUA-ACG-GCUCGCGuUGCgCaugg -5'
22648 3' -54 NC_005091.1 + 3662 0.68 0.688216
Target:  5'- cGAGCAgcaguUUGCCGuugaccaucuuGCGCAGguuCGCGU-CCg -3'
miRNA:   3'- -CUCGU-----AACGGCu----------CGCGUU---GCGCAuGG- -5'
22648 3' -54 NC_005091.1 + 20286 0.68 0.684921
Target:  5'- cGAGUAgccGCCGuGCGCGAUGUucgucgcaacguacGUACUg -3'
miRNA:   3'- -CUCGUaa-CGGCuCGCGUUGCG--------------CAUGG- -5'
22648 3' -54 NC_005091.1 + 51952 0.68 0.673907
Target:  5'- cGAGUA--GCCGAGUGCGcuacggccuucgauAUGCGU-CCg -3'
miRNA:   3'- -CUCGUaaCGGCUCGCGU--------------UGCGCAuGG- -5'
22648 3' -54 NC_005091.1 + 12373 0.68 0.666173
Target:  5'- cGAGCGcgGCC-AGUGCGACgGCGgcgACUa -3'
miRNA:   3'- -CUCGUaaCGGcUCGCGUUG-CGCa--UGG- -5'
22648 3' -54 NC_005091.1 + 53575 0.68 0.666173
Target:  5'- --cCAUUGCC-AGCGCAACcccgGCGcGCCg -3'
miRNA:   3'- cucGUAACGGcUCGCGUUG----CGCaUGG- -5'
22648 3' -54 NC_005091.1 + 33409 0.68 0.665067
Target:  5'- cGGCAUUGCCGAagacccgGCuGCuGCGCaaACCa -3'
miRNA:   3'- cUCGUAACGGCU-------CG-CGuUGCGcaUGG- -5'
22648 3' -54 NC_005091.1 + 20241 0.68 0.665067
Target:  5'- -cGCGcaGUCGAGCGUgaucgaaucggccGACGCGUcGCCg -3'
miRNA:   3'- cuCGUaaCGGCUCGCG-------------UUGCGCA-UGG- -5'
22648 3' -54 NC_005091.1 + 26036 0.68 0.65953
Target:  5'- -cGCcgUGgCGAGCGCGaucagcucgccgcgcACGCGcugaUACCa -3'
miRNA:   3'- cuCGuaACgGCUCGCGU---------------UGCGC----AUGG- -5'
22648 3' -54 NC_005091.1 + 54320 0.68 0.655097
Target:  5'- -cGCAUgGUCGAGCGCuuCGCGcaugucguCCg -3'
miRNA:   3'- cuCGUAaCGGCUCGCGuuGCGCau------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.