Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22648 | 3' | -54 | NC_005091.1 | + | 51514 | 0.67 | 0.74216 |
Target: 5'- gGGGC--UGUCGA-CGCuGCGCGUGCa -3' miRNA: 3'- -CUCGuaACGGCUcGCGuUGCGCAUGg -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 22748 | 0.67 | 0.74216 |
Target: 5'- -cGCcg-GCCGucAGCGCGgcguucagGCGCGUGCg -3' miRNA: 3'- cuCGuaaCGGC--UCGCGU--------UGCGCAUGg -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 26409 | 0.67 | 0.73155 |
Target: 5'- uAGCg--GCCGGGCGCGA-GCagGCCg -3' miRNA: 3'- cUCGuaaCGGCUCGCGUUgCGcaUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 5627 | 0.67 | 0.72084 |
Target: 5'- cGGUAUUGaCGAGCGuCAGgGCcUGCCu -3' miRNA: 3'- cUCGUAACgGCUCGC-GUUgCGcAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 48715 | 0.67 | 0.719763 |
Target: 5'- cGGCAcUGCaCGAGCGaCAcggagauacggccAUGCGUugCg -3' miRNA: 3'- cUCGUaACG-GCUCGC-GU-------------UGCGCAugG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 34552 | 0.67 | 0.710039 |
Target: 5'- uGGCGacUGCCGAGUGgGaccGCGCGgcgaACCg -3' miRNA: 3'- cUCGUa-ACGGCUCGCgU---UGCGCa---UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 54269 | 0.67 | 0.708955 |
Target: 5'- -cGCGUUGCCGAucGCGCGGucuuccugauggcCGCaGUaGCCg -3' miRNA: 3'- cuCGUAACGGCU--CGCGUU-------------GCG-CA-UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 5657 | 0.67 | 0.69916 |
Target: 5'- cAGCAU-GCuCGucCGCAACGUGaUACCg -3' miRNA: 3'- cUCGUAaCG-GCucGCGUUGCGC-AUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 49784 | 0.67 | 0.69916 |
Target: 5'- -uGCAgaGCUacGCGCAAUGCGUcgACCg -3' miRNA: 3'- cuCGUaaCGGcuCGCGUUGCGCA--UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 30342 | 0.68 | 0.688216 |
Target: 5'- cGAGCAUcUGCaCGAGCGCcACGgGa--- -3' miRNA: 3'- -CUCGUA-ACG-GCUCGCGuUGCgCaugg -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 3662 | 0.68 | 0.688216 |
Target: 5'- cGAGCAgcaguUUGCCGuugaccaucuuGCGCAGguuCGCGU-CCg -3' miRNA: 3'- -CUCGU-----AACGGCu----------CGCGUU---GCGCAuGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 49464 | 0.68 | 0.688216 |
Target: 5'- -cGUAgcGCaCGAGCGCGACGagcagGCCa -3' miRNA: 3'- cuCGUaaCG-GCUCGCGUUGCgca--UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 20286 | 0.68 | 0.684921 |
Target: 5'- cGAGUAgccGCCGuGCGCGAUGUucgucgcaacguacGUACUg -3' miRNA: 3'- -CUCGUaa-CGGCuCGCGUUGCG--------------CAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 51952 | 0.68 | 0.673907 |
Target: 5'- cGAGUA--GCCGAGUGCGcuacggccuucgauAUGCGU-CCg -3' miRNA: 3'- -CUCGUaaCGGCUCGCGU--------------UGCGCAuGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 12373 | 0.68 | 0.666173 |
Target: 5'- cGAGCGcgGCC-AGUGCGACgGCGgcgACUa -3' miRNA: 3'- -CUCGUaaCGGcUCGCGUUG-CGCa--UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 53575 | 0.68 | 0.666173 |
Target: 5'- --cCAUUGCC-AGCGCAACcccgGCGcGCCg -3' miRNA: 3'- cucGUAACGGcUCGCGUUG----CGCaUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 20241 | 0.68 | 0.665067 |
Target: 5'- -cGCGcaGUCGAGCGUgaucgaaucggccGACGCGUcGCCg -3' miRNA: 3'- cuCGUaaCGGCUCGCG-------------UUGCGCA-UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 33409 | 0.68 | 0.665067 |
Target: 5'- cGGCAUUGCCGAagacccgGCuGCuGCGCaaACCa -3' miRNA: 3'- cUCGUAACGGCU-------CG-CGuUGCGcaUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 26036 | 0.68 | 0.65953 |
Target: 5'- -cGCcgUGgCGAGCGCGaucagcucgccgcgcACGCGcugaUACCa -3' miRNA: 3'- cuCGuaACgGCUCGCGU---------------UGCGC----AUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 54320 | 0.68 | 0.655097 |
Target: 5'- -cGCAUgGUCGAGCGCuuCGCGcaugucguCCg -3' miRNA: 3'- cuCGUAaCGGCUCGCGuuGCGCau------GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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