miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22669 5' -58.5 NC_005091.1 + 22183 0.69 0.403633
Target:  5'- aGgUCGGCAuuuuGCuGGCGG-CCGUGCGCGa -3'
miRNA:   3'- gUgAGCCGU----CG-CUGCUgGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 26221 0.67 0.539092
Target:  5'- aCGCggCGGCAGCuuCGGCCUGa--GCGg -3'
miRNA:   3'- -GUGa-GCCGUCGcuGCUGGGCaugCGC- -5'
22669 5' -58.5 NC_005091.1 + 26347 0.77 0.121181
Target:  5'- cCGCUacgaUGGCAGCcccGGCGGCCCGcGCGCGg -3'
miRNA:   3'- -GUGA----GCCGUCG---CUGCUGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 27803 0.69 0.421689
Target:  5'- cCACgauccCGGuCGGCGAagaGACCC-UGCGCGu -3'
miRNA:   3'- -GUGa----GCC-GUCGCUg--CUGGGcAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 27922 0.69 0.386073
Target:  5'- ---aCGGCAugaaguaguugcGCGACGG-CCGUACGCGu -3'
miRNA:   3'- gugaGCCGU------------CGCUGCUgGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 29961 0.76 0.158394
Target:  5'- uCACUCGGCAucacauugcagcGCGACGGCUCGgugACGUu -3'
miRNA:   3'- -GUGAGCCGU------------CGCUGCUGGGCa--UGCGc -5'
22669 5' -58.5 NC_005091.1 + 30005 0.67 0.52779
Target:  5'- aGCgagCGGuCAGCGGCGucugcgcACCCGUgACGgGg -3'
miRNA:   3'- gUGa--GCC-GUCGCUGC-------UGGGCA-UGCgC- -5'
22669 5' -58.5 NC_005091.1 + 31634 0.69 0.421689
Target:  5'- --aUCGGCGGCGGCGuCCCacaccaGUACgGCa -3'
miRNA:   3'- gugAGCCGUCGCUGCuGGG------CAUG-CGc -5'
22669 5' -58.5 NC_005091.1 + 31717 0.68 0.488487
Target:  5'- cCGCcuUCGGCuGCGcCGAaaugCCGUACGCc -3'
miRNA:   3'- -GUG--AGCCGuCGCuGCUg---GGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 31864 0.66 0.559845
Target:  5'- gCGCUCGuCGGCGGCcuGCUCGUGcCGUGg -3'
miRNA:   3'- -GUGAGCcGUCGCUGc-UGGGCAU-GCGC- -5'
22669 5' -58.5 NC_005091.1 + 34178 0.68 0.477648
Target:  5'- aCACgauaUCGGCAaugccgcGCGACuGAUCCGguucGCGCGg -3'
miRNA:   3'- -GUG----AGCCGU-------CGCUG-CUGGGCa---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 34535 0.68 0.440223
Target:  5'- gAC-CGcGCGGCGAacCGG-CCGUACGCGa -3'
miRNA:   3'- gUGaGC-CGUCGCU--GCUgGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 34955 0.77 0.121181
Target:  5'- uCGCUUGGCGGCGGCgGACuuGaagGCGCGu -3'
miRNA:   3'- -GUGAGCCGUCGCUG-CUGggCa--UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 35097 0.72 0.264575
Target:  5'- aGCUCGaagcgcaauGCGGUGacuGCGGCCCGUGCgGCGg -3'
miRNA:   3'- gUGAGC---------CGUCGC---UGCUGGGCAUG-CGC- -5'
22669 5' -58.5 NC_005091.1 + 35239 0.69 0.420775
Target:  5'- uGC-CGGCAguaccucGCGGCGGCgCCGcgACGCGu -3'
miRNA:   3'- gUGaGCCGU-------CGCUGCUG-GGCa-UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 35340 0.71 0.328711
Target:  5'- aGCUCGGgGGCGACGACCaGU-CGa- -3'
miRNA:   3'- gUGAGCCgUCGCUGCUGGgCAuGCgc -5'
22669 5' -58.5 NC_005091.1 + 35628 0.71 0.328711
Target:  5'- gCGCUCGGCcggcuugaaguGGUGACG-CCCGguaGCGg -3'
miRNA:   3'- -GUGAGCCG-----------UCGCUGCuGGGCaugCGC- -5'
22669 5' -58.5 NC_005091.1 + 37029 0.66 0.591361
Target:  5'- aACUCaGCAGCccGCGACuucuCCGUGCGaCGg -3'
miRNA:   3'- gUGAGcCGUCGc-UGCUG----GGCAUGC-GC- -5'
22669 5' -58.5 NC_005091.1 + 40622 0.76 0.142406
Target:  5'- gACUCGGCGGCGGCGACCUaa--GCc -3'
miRNA:   3'- gUGAGCCGUCGCUGCUGGGcaugCGc -5'
22669 5' -58.5 NC_005091.1 + 44190 0.68 0.440223
Target:  5'- aCGC-CGuGC-GCGACaGugCCGUAUGCGg -3'
miRNA:   3'- -GUGaGC-CGuCGCUG-CugGGCAUGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.