Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22669 | 5' | -58.5 | NC_005091.1 | + | 22183 | 0.69 | 0.403633 |
Target: 5'- aGgUCGGCAuuuuGCuGGCGG-CCGUGCGCGa -3' miRNA: 3'- gUgAGCCGU----CG-CUGCUgGGCAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 26221 | 0.67 | 0.539092 |
Target: 5'- aCGCggCGGCAGCuuCGGCCUGa--GCGg -3' miRNA: 3'- -GUGa-GCCGUCGcuGCUGGGCaugCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 26347 | 0.77 | 0.121181 |
Target: 5'- cCGCUacgaUGGCAGCcccGGCGGCCCGcGCGCGg -3' miRNA: 3'- -GUGA----GCCGUCG---CUGCUGGGCaUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 27803 | 0.69 | 0.421689 |
Target: 5'- cCACgauccCGGuCGGCGAagaGACCC-UGCGCGu -3' miRNA: 3'- -GUGa----GCC-GUCGCUg--CUGGGcAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 27922 | 0.69 | 0.386073 |
Target: 5'- ---aCGGCAugaaguaguugcGCGACGG-CCGUACGCGu -3' miRNA: 3'- gugaGCCGU------------CGCUGCUgGGCAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 29961 | 0.76 | 0.158394 |
Target: 5'- uCACUCGGCAucacauugcagcGCGACGGCUCGgugACGUu -3' miRNA: 3'- -GUGAGCCGU------------CGCUGCUGGGCa--UGCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 30005 | 0.67 | 0.52779 |
Target: 5'- aGCgagCGGuCAGCGGCGucugcgcACCCGUgACGgGg -3' miRNA: 3'- gUGa--GCC-GUCGCUGC-------UGGGCA-UGCgC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 31634 | 0.69 | 0.421689 |
Target: 5'- --aUCGGCGGCGGCGuCCCacaccaGUACgGCa -3' miRNA: 3'- gugAGCCGUCGCUGCuGGG------CAUG-CGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 31717 | 0.68 | 0.488487 |
Target: 5'- cCGCcuUCGGCuGCGcCGAaaugCCGUACGCc -3' miRNA: 3'- -GUG--AGCCGuCGCuGCUg---GGCAUGCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 31864 | 0.66 | 0.559845 |
Target: 5'- gCGCUCGuCGGCGGCcuGCUCGUGcCGUGg -3' miRNA: 3'- -GUGAGCcGUCGCUGc-UGGGCAU-GCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 34178 | 0.68 | 0.477648 |
Target: 5'- aCACgauaUCGGCAaugccgcGCGACuGAUCCGguucGCGCGg -3' miRNA: 3'- -GUG----AGCCGU-------CGCUG-CUGGGCa---UGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 34535 | 0.68 | 0.440223 |
Target: 5'- gAC-CGcGCGGCGAacCGG-CCGUACGCGa -3' miRNA: 3'- gUGaGC-CGUCGCU--GCUgGGCAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 34955 | 0.77 | 0.121181 |
Target: 5'- uCGCUUGGCGGCGGCgGACuuGaagGCGCGu -3' miRNA: 3'- -GUGAGCCGUCGCUG-CUGggCa--UGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35097 | 0.72 | 0.264575 |
Target: 5'- aGCUCGaagcgcaauGCGGUGacuGCGGCCCGUGCgGCGg -3' miRNA: 3'- gUGAGC---------CGUCGC---UGCUGGGCAUG-CGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35239 | 0.69 | 0.420775 |
Target: 5'- uGC-CGGCAguaccucGCGGCGGCgCCGcgACGCGu -3' miRNA: 3'- gUGaGCCGU-------CGCUGCUG-GGCa-UGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35340 | 0.71 | 0.328711 |
Target: 5'- aGCUCGGgGGCGACGACCaGU-CGa- -3' miRNA: 3'- gUGAGCCgUCGCUGCUGGgCAuGCgc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35628 | 0.71 | 0.328711 |
Target: 5'- gCGCUCGGCcggcuugaaguGGUGACG-CCCGguaGCGg -3' miRNA: 3'- -GUGAGCCG-----------UCGCUGCuGGGCaugCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 37029 | 0.66 | 0.591361 |
Target: 5'- aACUCaGCAGCccGCGACuucuCCGUGCGaCGg -3' miRNA: 3'- gUGAGcCGUCGc-UGCUG----GGCAUGC-GC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 40622 | 0.76 | 0.142406 |
Target: 5'- gACUCGGCGGCGGCGACCUaa--GCc -3' miRNA: 3'- gUGAGCCGUCGCUGCUGGGcaugCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 44190 | 0.68 | 0.440223 |
Target: 5'- aCGC-CGuGC-GCGACaGugCCGUAUGCGg -3' miRNA: 3'- -GUGaGC-CGuCGCUG-CugGGCAUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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