miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22669 5' -58.5 NC_005091.1 + 1037 0.67 0.52779
Target:  5'- gCGCggguucCGGCA-CGACGGCUuccggguCGUACGCGa -3'
miRNA:   3'- -GUGa-----GCCGUcGCUGCUGG-------GCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 4215 0.67 0.508482
Target:  5'- uGCcCGGCGGCGcgcccgucacCGugCCGUACGUc -3'
miRNA:   3'- gUGaGCCGUCGCu---------GCugGGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 4823 0.67 0.508482
Target:  5'- gCGCUCGGC-GCGGCGGCaaCGgucaaGCGg -3'
miRNA:   3'- -GUGAGCCGuCGCUGCUGg-GCaug--CGC- -5'
22669 5' -58.5 NC_005091.1 + 6178 0.67 0.528813
Target:  5'- gGCUUGcgGGCGACGAgCCGaagcgGCGCGa -3'
miRNA:   3'- gUGAGCcgUCGCUGCUgGGCa----UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 6607 0.69 0.430898
Target:  5'- uCGCUCGcGCGGCGuccgggcugccgGCGuucauGCCCGaGCGCGc -3'
miRNA:   3'- -GUGAGC-CGUCGC------------UGC-----UGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 7173 0.69 0.430898
Target:  5'- uGC-CGGCAGCGGCGGCCgucuCG-AUGCc -3'
miRNA:   3'- gUGaGCCGUCGCUGCUGG----GCaUGCGc -5'
22669 5' -58.5 NC_005091.1 + 7335 0.75 0.166982
Target:  5'- aGCagugCGGCGGCGACGAacuugUCCaGUACGCGg -3'
miRNA:   3'- gUGa---GCCGUCGCUGCU-----GGG-CAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 9198 0.74 0.200403
Target:  5'- uCGC-CGuGCAGcCGGCGACCCGaaucGCGCGg -3'
miRNA:   3'- -GUGaGC-CGUC-GCUGCUGGGCa---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 10219 0.66 0.579761
Target:  5'- gCGCUCGGCGcGUGcCGGCguaacguCCGUcucGCGCGc -3'
miRNA:   3'- -GUGAGCCGU-CGCuGCUG-------GGCA---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 10824 1.07 0.000823
Target:  5'- gCACUCGGCAGCGACGACCCGUACGCGc -3'
miRNA:   3'- -GUGAGCCGUCGCUGCUGGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 10888 0.69 0.403633
Target:  5'- aGCUCGaccCGGCGGcCGGCCUGUAgGCa -3'
miRNA:   3'- gUGAGCc--GUCGCU-GCUGGGCAUgCGc -5'
22669 5' -58.5 NC_005091.1 + 13051 0.72 0.27117
Target:  5'- cCGCUCGGCccgGACGACCCGUG-GCc -3'
miRNA:   3'- -GUGAGCCGucgCUGCUGGGCAUgCGc -5'
22669 5' -58.5 NC_005091.1 + 13593 0.66 0.570305
Target:  5'- gGCgUCGaGCAGCGACGugaacgguCUCGgcgGCGCa -3'
miRNA:   3'- gUG-AGC-CGUCGCUGCu-------GGGCa--UGCGc -5'
22669 5' -58.5 NC_005091.1 + 15767 0.68 0.459212
Target:  5'- aGCUCGGCAacacgcauGcCGACGccCCCGguuUGCGCGg -3'
miRNA:   3'- gUGAGCCGU--------C-GCUGCu-GGGC---AUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 15949 0.67 0.515562
Target:  5'- cCACUUGGCGcucgcggcguccacGCGAUGACCUGcuuguCGCu -3'
miRNA:   3'- -GUGAGCCGU--------------CGCUGCUGGGCau---GCGc -5'
22669 5' -58.5 NC_005091.1 + 16369 0.66 0.60194
Target:  5'- aCACgcgCGGCcaAGCGACGuggaacguGCUCG-GCGCGu -3'
miRNA:   3'- -GUGa--GCCG--UCGCUGC--------UGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 16695 0.68 0.447766
Target:  5'- gGCUUGGCAgGCGGCGcagggaggcauuCCCG-ACGCa -3'
miRNA:   3'- gUGAGCCGU-CGCUGCu-----------GGGCaUGCGc -5'
22669 5' -58.5 NC_005091.1 + 18137 0.66 0.559845
Target:  5'- aCACgUCGGuCGGCGcgagcuucGCGGCCCGgcgaucgaGCGUGa -3'
miRNA:   3'- -GUG-AGCC-GUCGC--------UGCUGGGCa-------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 18176 0.67 0.539092
Target:  5'- aGCUCGGCAuCGAgaacaUGAUCC-UGCGCGc -3'
miRNA:   3'- gUGAGCCGUcGCU-----GCUGGGcAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 19631 0.77 0.124502
Target:  5'- uCugUCGGCGGCGcuCGGCCCGaaaGCGCa -3'
miRNA:   3'- -GugAGCCGUCGCu-GCUGGGCa--UGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.