miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22669 5' -58.5 NC_005091.1 + 10824 1.07 0.000823
Target:  5'- gCACUCGGCAGCGACGACCCGUACGCGc -3'
miRNA:   3'- -GUGAGCCGUCGCUGCUGGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 26347 0.77 0.121181
Target:  5'- cCGCUacgaUGGCAGCcccGGCGGCCCGcGCGCGg -3'
miRNA:   3'- -GUGA----GCCGUCG---CUGCUGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 34955 0.77 0.121181
Target:  5'- uCGCUUGGCGGCGGCgGACuuGaagGCGCGu -3'
miRNA:   3'- -GUGAGCCGUCGCUG-CUGggCa--UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 19631 0.77 0.124502
Target:  5'- uCugUCGGCGGCGcuCGGCCCGaaaGCGCa -3'
miRNA:   3'- -GugAGCCGUCGCu-GCUGGGCa--UGCGc -5'
22669 5' -58.5 NC_005091.1 + 44604 0.76 0.142406
Target:  5'- gGCgaCGGCAGCGACGGCCUGUaauaucgucucgACGUGc -3'
miRNA:   3'- gUGa-GCCGUCGCUGCUGGGCA------------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 40622 0.76 0.142406
Target:  5'- gACUCGGCGGCGGCGACCUaa--GCc -3'
miRNA:   3'- gUGAGCCGUCGCUGCUGGGcaugCGc -5'
22669 5' -58.5 NC_005091.1 + 55227 0.76 0.158394
Target:  5'- cCGgUCGGCucguuCGACGcgGCCCGUGCGCGg -3'
miRNA:   3'- -GUgAGCCGuc---GCUGC--UGGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 29961 0.76 0.158394
Target:  5'- uCACUCGGCAucacauugcagcGCGACGGCUCGgugACGUu -3'
miRNA:   3'- -GUGAGCCGU------------CGCUGCUGGGCa--UGCGc -5'
22669 5' -58.5 NC_005091.1 + 7335 0.75 0.166982
Target:  5'- aGCagugCGGCGGCGACGAacuugUCCaGUACGCGg -3'
miRNA:   3'- gUGa---GCCGUCGCUGCU-----GGG-CAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 9198 0.74 0.200403
Target:  5'- uCGC-CGuGCAGcCGGCGACCCGaaucGCGCGg -3'
miRNA:   3'- -GUGaGC-CGUC-GCUGCUGGGCa---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 35097 0.72 0.264575
Target:  5'- aGCUCGaagcgcaauGCGGUGacuGCGGCCCGUGCgGCGg -3'
miRNA:   3'- gUGAGC---------CGUCGC---UGCUGGGCAUG-CGC- -5'
22669 5' -58.5 NC_005091.1 + 13051 0.72 0.27117
Target:  5'- cCGCUCGGCccgGACGACCCGUG-GCc -3'
miRNA:   3'- -GUGAGCCGucgCUGCUGGGCAUgCGc -5'
22669 5' -58.5 NC_005091.1 + 35628 0.71 0.328711
Target:  5'- gCGCUCGGCcggcuugaaguGGUGACG-CCCGguaGCGg -3'
miRNA:   3'- -GUGAGCCG-----------UCGCUGCuGGGCaugCGC- -5'
22669 5' -58.5 NC_005091.1 + 35340 0.71 0.328711
Target:  5'- aGCUCGGgGGCGACGACCaGU-CGa- -3'
miRNA:   3'- gUGAGCCgUCGCUGCUGGgCAuGCgc -5'
22669 5' -58.5 NC_005091.1 + 46035 0.7 0.377485
Target:  5'- aGCgagagCGGCGGggagaucgauuaCGACGACCCGUuCGCc -3'
miRNA:   3'- gUGa----GCCGUC------------GCUGCUGGGCAuGCGc -5'
22669 5' -58.5 NC_005091.1 + 27922 0.69 0.386073
Target:  5'- ---aCGGCAugaaguaguugcGCGACGG-CCGUACGCGu -3'
miRNA:   3'- gugaGCCGU------------CGCUGCUgGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 54510 0.69 0.39479
Target:  5'- aCACggaaGGCGGCGAa-ACCC-UGCGCGg -3'
miRNA:   3'- -GUGag--CCGUCGCUgcUGGGcAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 22183 0.69 0.403633
Target:  5'- aGgUCGGCAuuuuGCuGGCGG-CCGUGCGCGa -3'
miRNA:   3'- gUgAGCCGU----CG-CUGCUgGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 10888 0.69 0.403633
Target:  5'- aGCUCGaccCGGCGGcCGGCCUGUAgGCa -3'
miRNA:   3'- gUGAGCc--GUCGCU-GCUGGGCAUgCGc -5'
22669 5' -58.5 NC_005091.1 + 53440 0.69 0.403633
Target:  5'- uGCUCaGGCGGCGGCcacaauGGCCCGgcuCGUa -3'
miRNA:   3'- gUGAG-CCGUCGCUG------CUGGGCau-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.