miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22669 5' -58.5 NC_005091.1 + 26221 0.67 0.539092
Target:  5'- aCGCggCGGCAGCuuCGGCCUGa--GCGg -3'
miRNA:   3'- -GUGa-GCCGUCGcuGCUGGGCaugCGC- -5'
22669 5' -58.5 NC_005091.1 + 15767 0.68 0.459212
Target:  5'- aGCUCGGCAacacgcauGcCGACGccCCCGguuUGCGCGg -3'
miRNA:   3'- gUGAGCCGU--------C-GCUGCu-GGGC---AUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 34178 0.68 0.477648
Target:  5'- aCACgauaUCGGCAaugccgcGCGACuGAUCCGguucGCGCGg -3'
miRNA:   3'- -GUG----AGCCGU-------CGCUG-CUGGGCa---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 31717 0.68 0.488487
Target:  5'- cCGCcuUCGGCuGCGcCGAaaugCCGUACGCc -3'
miRNA:   3'- -GUG--AGCCGuCGCuGCUg---GGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 55592 0.67 0.49844
Target:  5'- gCGCUCGuGCAgGCGGCGAUCgGcgaagugAUGCGg -3'
miRNA:   3'- -GUGAGC-CGU-CGCUGCUGGgCa------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 4215 0.67 0.508482
Target:  5'- uGCcCGGCGGCGcgcccgucacCGugCCGUACGUc -3'
miRNA:   3'- gUGaGCCGUCGCu---------GCugGGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 4823 0.67 0.508482
Target:  5'- gCGCUCGGC-GCGGCGGCaaCGgucaaGCGg -3'
miRNA:   3'- -GUGAGCCGuCGCUGCUGg-GCaug--CGC- -5'
22669 5' -58.5 NC_005091.1 + 15949 0.67 0.515562
Target:  5'- cCACUUGGCGcucgcggcguccacGCGAUGACCUGcuuguCGCu -3'
miRNA:   3'- -GUGAGCCGU--------------CGCUGCUGGGCau---GCGc -5'
22669 5' -58.5 NC_005091.1 + 30005 0.67 0.52779
Target:  5'- aGCgagCGGuCAGCGGCGucugcgcACCCGUgACGgGg -3'
miRNA:   3'- gUGa--GCC-GUCGCUGC-------UGGGCA-UGCgC- -5'
22669 5' -58.5 NC_005091.1 + 44190 0.68 0.440223
Target:  5'- aCGC-CGuGC-GCGACaGugCCGUAUGCGg -3'
miRNA:   3'- -GUGaGC-CGuCGCUG-CugGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 6607 0.69 0.430898
Target:  5'- uCGCUCGcGCGGCGuccgggcugccgGCGuucauGCCCGaGCGCGc -3'
miRNA:   3'- -GUGAGC-CGUCGC------------UGC-----UGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 31634 0.69 0.421689
Target:  5'- --aUCGGCGGCGGCGuCCCacaccaGUACgGCa -3'
miRNA:   3'- gugAGCCGUCGCUGCuGGG------CAUG-CGc -5'
22669 5' -58.5 NC_005091.1 + 26347 0.77 0.121181
Target:  5'- cCGCUacgaUGGCAGCcccGGCGGCCCGcGCGCGg -3'
miRNA:   3'- -GUGA----GCCGUCG---CUGCUGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 7335 0.75 0.166982
Target:  5'- aGCagugCGGCGGCGACGAacuugUCCaGUACGCGg -3'
miRNA:   3'- gUGa---GCCGUCGCUGCU-----GGG-CAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 9198 0.74 0.200403
Target:  5'- uCGC-CGuGCAGcCGGCGACCCGaaucGCGCGg -3'
miRNA:   3'- -GUGaGC-CGUC-GCUGCUGGGCa---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 35340 0.71 0.328711
Target:  5'- aGCUCGGgGGCGACGACCaGU-CGa- -3'
miRNA:   3'- gUGAGCCgUCGCUGCUGGgCAuGCgc -5'
22669 5' -58.5 NC_005091.1 + 46035 0.7 0.377485
Target:  5'- aGCgagagCGGCGGggagaucgauuaCGACGACCCGUuCGCc -3'
miRNA:   3'- gUGa----GCCGUC------------GCUGCUGGGCAuGCGc -5'
22669 5' -58.5 NC_005091.1 + 27922 0.69 0.386073
Target:  5'- ---aCGGCAugaaguaguugcGCGACGG-CCGUACGCGu -3'
miRNA:   3'- gugaGCCGU------------CGCUGCUgGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 10888 0.69 0.403633
Target:  5'- aGCUCGaccCGGCGGcCGGCCUGUAgGCa -3'
miRNA:   3'- gUGAGCc--GUCGCU-GCUGGGCAUgCGc -5'
22669 5' -58.5 NC_005091.1 + 22183 0.69 0.403633
Target:  5'- aGgUCGGCAuuuuGCuGGCGG-CCGUGCGCGa -3'
miRNA:   3'- gUgAGCCGU----CG-CUGCUgGGCAUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.