miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22669 5' -58.5 NC_005091.1 + 55592 0.67 0.49844
Target:  5'- gCGCUCGuGCAgGCGGCGAUCgGcgaagugAUGCGg -3'
miRNA:   3'- -GUGAGC-CGU-CGCUGCUGGgCa------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 55521 0.66 0.559845
Target:  5'- aCGCcCGGCuGaCGGCGGCCgCG-ACGCu -3'
miRNA:   3'- -GUGaGCCGuC-GCUGCUGG-GCaUGCGc -5'
22669 5' -58.5 NC_005091.1 + 55227 0.76 0.158394
Target:  5'- cCGgUCGGCucguuCGACGcgGCCCGUGCGCGg -3'
miRNA:   3'- -GUgAGCCGuc---GCUGC--UGGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 54510 0.69 0.39479
Target:  5'- aCACggaaGGCGGCGAa-ACCC-UGCGCGg -3'
miRNA:   3'- -GUGag--CCGUCGCUgcUGGGcAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 53440 0.69 0.403633
Target:  5'- uGCUCaGGCGGCGGCcacaauGGCCCGgcuCGUa -3'
miRNA:   3'- gUGAG-CCGUCGCUG------CUGGGCau-GCGc -5'
22669 5' -58.5 NC_005091.1 + 52792 0.66 0.591361
Target:  5'- gACgCGGCGGCGAUcaGG-CCGcACGCGg -3'
miRNA:   3'- gUGaGCCGUCGCUG--CUgGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 51195 0.66 0.60194
Target:  5'- cCACgggCGcGaCGGCGACGAUuuagggUCGUACGUGa -3'
miRNA:   3'- -GUGa--GC-C-GUCGCUGCUG------GGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 50835 0.68 0.478628
Target:  5'- aACUgCGGCucgauaucaAGCGuGCGGCCguCGUGCGCGc -3'
miRNA:   3'- gUGA-GCCG---------UCGC-UGCUGG--GCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 48788 0.68 0.488487
Target:  5'- uCGCUCGuGCAGUGcCGcauuggccGgCCGUGCGCa -3'
miRNA:   3'- -GUGAGC-CGUCGCuGC--------UgGGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 46035 0.7 0.377485
Target:  5'- aGCgagagCGGCGGggagaucgauuaCGACGACCCGUuCGCc -3'
miRNA:   3'- gUGa----GCCGUC------------GCUGCUGGGCAuGCGc -5'
22669 5' -58.5 NC_005091.1 + 45521 0.66 0.590304
Target:  5'- uCGC-CGGguGUGAUGgggacaauguuguACCCGUuCGCGa -3'
miRNA:   3'- -GUGaGCCguCGCUGC-------------UGGGCAuGCGC- -5'
22669 5' -58.5 NC_005091.1 + 44604 0.76 0.142406
Target:  5'- gGCgaCGGCAGCGACGGCCUGUaauaucgucucgACGUGc -3'
miRNA:   3'- gUGa-GCCGUCGCUGCUGGGCA------------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 44190 0.68 0.440223
Target:  5'- aCGC-CGuGC-GCGACaGugCCGUAUGCGg -3'
miRNA:   3'- -GUGaGC-CGuCGCUG-CugGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 40622 0.76 0.142406
Target:  5'- gACUCGGCGGCGGCGACCUaa--GCc -3'
miRNA:   3'- gUGAGCCGUCGCUGCUGGGcaugCGc -5'
22669 5' -58.5 NC_005091.1 + 37029 0.66 0.591361
Target:  5'- aACUCaGCAGCccGCGACuucuCCGUGCGaCGg -3'
miRNA:   3'- gUGAGcCGUCGc-UGCUG----GGCAUGC-GC- -5'
22669 5' -58.5 NC_005091.1 + 35628 0.71 0.328711
Target:  5'- gCGCUCGGCcggcuugaaguGGUGACG-CCCGguaGCGg -3'
miRNA:   3'- -GUGAGCCG-----------UCGCUGCuGGGCaugCGC- -5'
22669 5' -58.5 NC_005091.1 + 35340 0.71 0.328711
Target:  5'- aGCUCGGgGGCGACGACCaGU-CGa- -3'
miRNA:   3'- gUGAGCCgUCGCUGCUGGgCAuGCgc -5'
22669 5' -58.5 NC_005091.1 + 35239 0.69 0.420775
Target:  5'- uGC-CGGCAguaccucGCGGCGGCgCCGcgACGCGu -3'
miRNA:   3'- gUGaGCCGU-------CGCUGCUG-GGCa-UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 35097 0.72 0.264575
Target:  5'- aGCUCGaagcgcaauGCGGUGacuGCGGCCCGUGCgGCGg -3'
miRNA:   3'- gUGAGC---------CGUCGC---UGCUGGGCAUG-CGC- -5'
22669 5' -58.5 NC_005091.1 + 34955 0.77 0.121181
Target:  5'- uCGCUUGGCGGCGGCgGACuuGaagGCGCGu -3'
miRNA:   3'- -GUGAGCCGUCGCUG-CUGggCa--UGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.