Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22669 | 5' | -58.5 | NC_005091.1 | + | 55592 | 0.67 | 0.49844 |
Target: 5'- gCGCUCGuGCAgGCGGCGAUCgGcgaagugAUGCGg -3' miRNA: 3'- -GUGAGC-CGU-CGCUGCUGGgCa------UGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 55521 | 0.66 | 0.559845 |
Target: 5'- aCGCcCGGCuGaCGGCGGCCgCG-ACGCu -3' miRNA: 3'- -GUGaGCCGuC-GCUGCUGG-GCaUGCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 55227 | 0.76 | 0.158394 |
Target: 5'- cCGgUCGGCucguuCGACGcgGCCCGUGCGCGg -3' miRNA: 3'- -GUgAGCCGuc---GCUGC--UGGGCAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 54510 | 0.69 | 0.39479 |
Target: 5'- aCACggaaGGCGGCGAa-ACCC-UGCGCGg -3' miRNA: 3'- -GUGag--CCGUCGCUgcUGGGcAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 53440 | 0.69 | 0.403633 |
Target: 5'- uGCUCaGGCGGCGGCcacaauGGCCCGgcuCGUa -3' miRNA: 3'- gUGAG-CCGUCGCUG------CUGGGCau-GCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 52792 | 0.66 | 0.591361 |
Target: 5'- gACgCGGCGGCGAUcaGG-CCGcACGCGg -3' miRNA: 3'- gUGaGCCGUCGCUG--CUgGGCaUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 51195 | 0.66 | 0.60194 |
Target: 5'- cCACgggCGcGaCGGCGACGAUuuagggUCGUACGUGa -3' miRNA: 3'- -GUGa--GC-C-GUCGCUGCUG------GGCAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 50835 | 0.68 | 0.478628 |
Target: 5'- aACUgCGGCucgauaucaAGCGuGCGGCCguCGUGCGCGc -3' miRNA: 3'- gUGA-GCCG---------UCGC-UGCUGG--GCAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 48788 | 0.68 | 0.488487 |
Target: 5'- uCGCUCGuGCAGUGcCGcauuggccGgCCGUGCGCa -3' miRNA: 3'- -GUGAGC-CGUCGCuGC--------UgGGCAUGCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 46035 | 0.7 | 0.377485 |
Target: 5'- aGCgagagCGGCGGggagaucgauuaCGACGACCCGUuCGCc -3' miRNA: 3'- gUGa----GCCGUC------------GCUGCUGGGCAuGCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 45521 | 0.66 | 0.590304 |
Target: 5'- uCGC-CGGguGUGAUGgggacaauguuguACCCGUuCGCGa -3' miRNA: 3'- -GUGaGCCguCGCUGC-------------UGGGCAuGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 44604 | 0.76 | 0.142406 |
Target: 5'- gGCgaCGGCAGCGACGGCCUGUaauaucgucucgACGUGc -3' miRNA: 3'- gUGa-GCCGUCGCUGCUGGGCA------------UGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 44190 | 0.68 | 0.440223 |
Target: 5'- aCGC-CGuGC-GCGACaGugCCGUAUGCGg -3' miRNA: 3'- -GUGaGC-CGuCGCUG-CugGGCAUGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 40622 | 0.76 | 0.142406 |
Target: 5'- gACUCGGCGGCGGCGACCUaa--GCc -3' miRNA: 3'- gUGAGCCGUCGCUGCUGGGcaugCGc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 37029 | 0.66 | 0.591361 |
Target: 5'- aACUCaGCAGCccGCGACuucuCCGUGCGaCGg -3' miRNA: 3'- gUGAGcCGUCGc-UGCUG----GGCAUGC-GC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35628 | 0.71 | 0.328711 |
Target: 5'- gCGCUCGGCcggcuugaaguGGUGACG-CCCGguaGCGg -3' miRNA: 3'- -GUGAGCCG-----------UCGCUGCuGGGCaugCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35340 | 0.71 | 0.328711 |
Target: 5'- aGCUCGGgGGCGACGACCaGU-CGa- -3' miRNA: 3'- gUGAGCCgUCGCUGCUGGgCAuGCgc -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35239 | 0.69 | 0.420775 |
Target: 5'- uGC-CGGCAguaccucGCGGCGGCgCCGcgACGCGu -3' miRNA: 3'- gUGaGCCGU-------CGCUGCUG-GGCa-UGCGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 35097 | 0.72 | 0.264575 |
Target: 5'- aGCUCGaagcgcaauGCGGUGacuGCGGCCCGUGCgGCGg -3' miRNA: 3'- gUGAGC---------CGUCGC---UGCUGGGCAUG-CGC- -5' |
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22669 | 5' | -58.5 | NC_005091.1 | + | 34955 | 0.77 | 0.121181 |
Target: 5'- uCGCUUGGCGGCGGCgGACuuGaagGCGCGu -3' miRNA: 3'- -GUGAGCCGUCGCUG-CUGggCa--UGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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