miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 5' -59.6 NC_005091.1 + 19467 1.11 0.000333
Target:  5'- cCGAACACGACGGCCUGCGGCGUGCCCu -3'
miRNA:   3'- -GCUUGUGCUGCCGGACGCCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 22925 0.79 0.074687
Target:  5'- uCGAAUAUGGCGGCCgagcaGCGGCGUucGCuCCg -3'
miRNA:   3'- -GCUUGUGCUGCCGGa----CGCCGCA--CG-GG- -5'
22682 5' -59.6 NC_005091.1 + 48852 0.77 0.115288
Target:  5'- cCGAuuGCcCGugucACGGCCUGCcgcguguGGCGUGCCCg -3'
miRNA:   3'- -GCU--UGuGC----UGCCGGACG-------CCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 26678 0.75 0.143191
Target:  5'- ----uGCGGCGGCCgGCGGCG-GCCg -3'
miRNA:   3'- gcuugUGCUGCCGGaCGCCGCaCGGg -5'
22682 5' -59.6 NC_005091.1 + 44841 0.75 0.150976
Target:  5'- aCGAcCACGGCGGCCggcaaggGCGGCG-GCa- -3'
miRNA:   3'- -GCUuGUGCUGCCGGa------CGCCGCaCGgg -5'
22682 5' -59.6 NC_005091.1 + 25041 0.74 0.163375
Target:  5'- gCGAgACugGuCGGCaCUGCGGCG-GCCg -3'
miRNA:   3'- -GCU-UGugCuGCCG-GACGCCGCaCGGg -5'
22682 5' -59.6 NC_005091.1 + 46542 0.74 0.172142
Target:  5'- --cGCGCGACGGCUUGuCGaGCGUcGCCUu -3'
miRNA:   3'- gcuUGUGCUGCCGGAC-GC-CGCA-CGGG- -5'
22682 5' -59.6 NC_005091.1 + 22828 0.73 0.205682
Target:  5'- uGAACGCcgcgcuGACGGCCgGCGGCGgaacgagcuggaaUGUCCc -3'
miRNA:   3'- gCUUGUG------CUGCCGGaCGCCGC-------------ACGGG- -5'
22682 5' -59.6 NC_005091.1 + 36092 0.72 0.216961
Target:  5'- aGAACAUGugGGUCUGCaaCGUGUUCg -3'
miRNA:   3'- gCUUGUGCugCCGGACGccGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 35082 0.72 0.223077
Target:  5'- gCGGugACuGCGGCCcgUGCGGCGgcggucguuccaaugGCCCc -3'
miRNA:   3'- -GCUugUGcUGCCGG--ACGCCGCa--------------CGGG- -5'
22682 5' -59.6 NC_005091.1 + 28694 0.71 0.271399
Target:  5'- gCGGgcGCACGACacacgccggGGCCUGCGcGCaUGCCa -3'
miRNA:   3'- -GCU--UGUGCUG---------CCGGACGC-CGcACGGg -5'
22682 5' -59.6 NC_005091.1 + 48720 0.7 0.291843
Target:  5'- aGGcuACGCGGCGGgCUGCuGCGUGUUg -3'
miRNA:   3'- gCU--UGUGCUGCCgGACGcCGCACGGg -5'
22682 5' -59.6 NC_005091.1 + 18134 0.7 0.291843
Target:  5'- aGAACACGuCGGUCgGCGcgagcuucGCG-GCCCg -3'
miRNA:   3'- gCUUGUGCuGCCGGaCGC--------CGCaCGGG- -5'
22682 5' -59.6 NC_005091.1 + 20106 0.7 0.303953
Target:  5'- -aAGCGCGGCGGUCUGCGccuCGcauacacgaaaggcUGCCCg -3'
miRNA:   3'- gcUUGUGCUGCCGGACGCc--GC--------------ACGGG- -5'
22682 5' -59.6 NC_005091.1 + 26387 0.7 0.313472
Target:  5'- aCGGGCAUucaGGCGGUCUGCuGCGgcaGCCg -3'
miRNA:   3'- -GCUUGUG---CUGCCGGACGcCGCa--CGGg -5'
22682 5' -59.6 NC_005091.1 + 31866 0.7 0.320947
Target:  5'- uCGcGCucguCGGCGGCCUGCu-CGUGCCg -3'
miRNA:   3'- -GCuUGu---GCUGCCGGACGccGCACGGg -5'
22682 5' -59.6 NC_005091.1 + 44193 0.69 0.336293
Target:  5'- cCGuGCGCGACaGuGCCguaUGCGGCGUcuucGCCUg -3'
miRNA:   3'- -GCuUGUGCUG-C-CGG---ACGCCGCA----CGGG- -5'
22682 5' -59.6 NC_005091.1 + 3330 0.69 0.344165
Target:  5'- uCGAagGCACGGuuGCUUcCGGCGUGUCCc -3'
miRNA:   3'- -GCU--UGUGCUgcCGGAcGCCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 14404 0.69 0.352169
Target:  5'- gGAACGCGuacuGCGuGCCUGCGGUGagaGCgaCCg -3'
miRNA:   3'- gCUUGUGC----UGC-CGGACGCCGCa--CG--GG- -5'
22682 5' -59.6 NC_005091.1 + 49098 0.69 0.360303
Target:  5'- -cGACACGAUGGCCggGCGaaGgGUGCUa -3'
miRNA:   3'- gcUUGUGCUGCCGGa-CGC--CgCACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.