miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 5' -59.6 NC_005091.1 + 620 0.66 0.541357
Target:  5'- aGGAUAUGGCGGuagacguucaggauuCCcgGCcGCGUGCCUg -3'
miRNA:   3'- gCUUGUGCUGCC---------------GGa-CGcCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 1943 0.67 0.44856
Target:  5'- uCGAACGCGACGa--UGCGGCcgccGUGUCg -3'
miRNA:   3'- -GCUUGUGCUGCcggACGCCG----CACGGg -5'
22682 5' -59.6 NC_005091.1 + 3330 0.69 0.344165
Target:  5'- uCGAagGCACGGuuGCUUcCGGCGUGUCCc -3'
miRNA:   3'- -GCU--UGUGCUgcCGGAcGCCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 4233 0.66 0.534193
Target:  5'- -cGACcUGACGGCugUggcagaggaugaagUGCGGCGUGCCg -3'
miRNA:   3'- gcUUGuGCUGCCG--G--------------ACGCCGCACGGg -5'
22682 5' -59.6 NC_005091.1 + 4305 0.66 0.496936
Target:  5'- uCGuguuCGCGcCGGCCgucgucuuccUGUuucccggcugGGCGUGCCCg -3'
miRNA:   3'- -GCuu--GUGCuGCCGG----------ACG----------CCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 5827 0.68 0.384625
Target:  5'- aCGcAGCACGgcucgaaGCGGUgcGCGGCGUGCgCa -3'
miRNA:   3'- -GC-UUGUGC-------UGCCGgaCGCCGCACGgG- -5'
22682 5' -59.6 NC_005091.1 + 6187 0.67 0.439198
Target:  5'- -uAGCGCGGgGGCUUGCGgGCGacgaGCCg -3'
miRNA:   3'- gcUUGUGCUgCCGGACGC-CGCa---CGGg -5'
22682 5' -59.6 NC_005091.1 + 6612 0.67 0.467608
Target:  5'- --cGCGCGGCguccGGgCUGcCGGCGUucauGCCCg -3'
miRNA:   3'- gcuUGUGCUG----CCgGAC-GCCGCA----CGGG- -5'
22682 5' -59.6 NC_005091.1 + 7198 0.68 0.415391
Target:  5'- aGAugGCGGCGcguuaccuucgucuuGCCggcaGCGGCGgccgucucgaUGCCCu -3'
miRNA:   3'- gCUugUGCUGC---------------CGGa---CGCCGC----------ACGGG- -5'
22682 5' -59.6 NC_005091.1 + 9176 0.66 0.547522
Target:  5'- aCGAACguAUGAUGaGCCUGCGucgcCGUGCagCCg -3'
miRNA:   3'- -GCUUG--UGCUGC-CGGACGCc---GCACG--GG- -5'
22682 5' -59.6 NC_005091.1 + 9362 0.67 0.467608
Target:  5'- cCGGu--CGGCGGCCaGCGGCGaGCa- -3'
miRNA:   3'- -GCUuguGCUGCCGGaCGCCGCaCGgg -5'
22682 5' -59.6 NC_005091.1 + 12156 0.66 0.547522
Target:  5'- aCGaAGCGCG-CGuaCUGCGGCGggaucagcGCCUu -3'
miRNA:   3'- -GC-UUGUGCuGCcgGACGCCGCa-------CGGG- -5'
22682 5' -59.6 NC_005091.1 + 14404 0.69 0.352169
Target:  5'- gGAACGCGuacuGCGuGCCUGCGGUGagaGCgaCCg -3'
miRNA:   3'- gCUUGUGC----UGC-CGGACGCCGCa--CG--GG- -5'
22682 5' -59.6 NC_005091.1 + 16801 0.68 0.385483
Target:  5'- gGGACgACGuaGCGGCCUuccuagGCGGCGcguggGCCUu -3'
miRNA:   3'- gCUUG-UGC--UGCCGGA------CGCCGCa----CGGG- -5'
22682 5' -59.6 NC_005091.1 + 18134 0.7 0.291843
Target:  5'- aGAACACGuCGGUCgGCGcgagcuucGCG-GCCCg -3'
miRNA:   3'- gCUUGUGCuGCCGGaCGC--------CGCaCGGG- -5'
22682 5' -59.6 NC_005091.1 + 18994 0.66 0.527063
Target:  5'- uGAAucCGCGACuGGCCgcgaugcucgGCGGaauCGUGCCg -3'
miRNA:   3'- gCUU--GUGCUG-CCGGa---------CGCC---GCACGGg -5'
22682 5' -59.6 NC_005091.1 + 19467 1.11 0.000333
Target:  5'- cCGAACACGACGGCCUGCGGCGUGCCCu -3'
miRNA:   3'- -GCUUGUGCUGCCGGACGCCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 20106 0.7 0.303953
Target:  5'- -aAGCGCGGCGGUCUGCGccuCGcauacacgaaaggcUGCCCg -3'
miRNA:   3'- gcUUGUGCUGCCGGACGCc--GC--------------ACGGG- -5'
22682 5' -59.6 NC_005091.1 + 20362 0.67 0.477288
Target:  5'- uCGcGCACGGCGGCUacucgcaaaGCGGCGacgcgucgGCCg -3'
miRNA:   3'- -GCuUGUGCUGCCGGa--------CGCCGCa-------CGGg -5'
22682 5' -59.6 NC_005091.1 + 22828 0.73 0.205682
Target:  5'- uGAACGCcgcgcuGACGGCCgGCGGCGgaacgagcuggaaUGUCCc -3'
miRNA:   3'- gCUUGUG------CUGCCGGaCGCCGC-------------ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.