miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 31572 1.14 0.002448
Target:  5'- uCGACCAAACGAUCGAUGAACACCGGCg -3'
miRNA:   3'- -GCUGGUUUGCUAGCUACUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 52678 0.79 0.374683
Target:  5'- aCGACCAGACGggCGcgc-ACGCCGGCc -3'
miRNA:   3'- -GCUGGUUUGCuaGCuacuUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 9775 0.79 0.392911
Target:  5'- gCGGCUGAAggccCGGUCGAUGAGuCGCUGGCc -3'
miRNA:   3'- -GCUGGUUU----GCUAGCUACUU-GUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 39856 0.78 0.42131
Target:  5'- gGACCAAACGAaCGAuUGGGCGaaGGCa -3'
miRNA:   3'- gCUGGUUUGCUaGCU-ACUUGUggCCG- -5'
22701 3' -49.6 NC_005091.1 + 25157 0.77 0.471267
Target:  5'- uGGCCGc-CGAUCGGuUGAACGCCGcGCu -3'
miRNA:   3'- gCUGGUuuGCUAGCU-ACUUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 6715 0.77 0.471267
Target:  5'- aCGAgCGcGCGcUCGGgcaUGAACGCCGGCa -3'
miRNA:   3'- -GCUgGUuUGCuAGCU---ACUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 2578 0.77 0.492078
Target:  5'- uCGACCAAAUucUCGAUGGcaucGCACUGGUu -3'
miRNA:   3'- -GCUGGUUUGcuAGCUACU----UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 57788 0.76 0.54581
Target:  5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3'
miRNA:   3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 394 0.76 0.54581
Target:  5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3'
miRNA:   3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 18799 0.76 0.54581
Target:  5'- aGACCAucaaGG-CGAUGAAC-CCGGCg -3'
miRNA:   3'- gCUGGUuug-CUaGCUACUUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25093 0.75 0.567846
Target:  5'- gCGGCCAcggaGGCGGUCGccaucGAcGCGCCGGCu -3'
miRNA:   3'- -GCUGGU----UUGCUAGCua---CU-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 29477 0.75 0.57895
Target:  5'- gCGaACCGGGCGAgCGAcguaGGACGCUGGCg -3'
miRNA:   3'- -GC-UGGUUUGCUaGCUa---CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3237 0.75 0.590099
Target:  5'- cCGGCCGcuCGAUCGAUGAcuucaacccgcGCAugaUCGGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGCUACU-----------UGU---GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 9370 0.74 0.63497
Target:  5'- aCGGCCAGcCGGUCGgcGGcCAgCGGCg -3'
miRNA:   3'- -GCUGGUUuGCUAGCuaCUuGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 10048 0.74 0.63497
Target:  5'- uGACCGGACGAggaUCGAgccgGGGCcguaauacuGCCGGUg -3'
miRNA:   3'- gCUGGUUUGCU---AGCUa---CUUG---------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 18160 0.72 0.741094
Target:  5'- gCGGCCcGGCGAUCGAgcgUGAGCGugaaccgcuucaaCGGCg -3'
miRNA:   3'- -GCUGGuUUGCUAGCU---ACUUGUg------------GCCG- -5'
22701 3' -49.6 NC_005091.1 + 32010 0.72 0.745361
Target:  5'- aGAagaAAAUGAUCGAucgUGAucuCGCCGGCa -3'
miRNA:   3'- gCUgg-UUUGCUAGCU---ACUu--GUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31204 0.72 0.745361
Target:  5'- -uGCCGccGAUGAUCGGcUGcuCGCCGGCa -3'
miRNA:   3'- gcUGGU--UUGCUAGCU-ACuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 44142 0.72 0.745361
Target:  5'- cCGAgCAGAUGAUCGggGcguAUGCCGGUc -3'
miRNA:   3'- -GCUgGUUUGCUAGCuaCu--UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 40271 0.71 0.776695
Target:  5'- uCGAUgc-GCGGUCGAUGGuaguACAuCCGGCg -3'
miRNA:   3'- -GCUGguuUGCUAGCUACU----UGU-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.