Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 394 | 0.76 | 0.54581 |
Target: 5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3' miRNA: 3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 446 | 0.66 | 0.973653 |
Target: 5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3' miRNA: 3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 657 | 0.7 | 0.822846 |
Target: 5'- uCGACCGGGC-AUCGcgGAaaucuacgcggacuGCGCCGcGCg -3' miRNA: 3'- -GCUGGUUUGcUAGCuaCU--------------UGUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 990 | 0.7 | 0.861063 |
Target: 5'- gCGugCGAGCaGGUCgcaauGAUGAucGCGCCGGg -3' miRNA: 3'- -GCugGUUUG-CUAG-----CUACU--UGUGGCCg -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 1207 | 0.69 | 0.884282 |
Target: 5'- cCGGCCAuccCGAccaUGAUGAACauggacuuccucgGCCGGCu -3' miRNA: 3'- -GCUGGUuu-GCUa--GCUACUUG-------------UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 1251 | 0.71 | 0.816237 |
Target: 5'- gGGCCGGAUG-UCGGaaggcuggggcGAAUACCGGCa -3' miRNA: 3'- gCUGGUUUGCuAGCUa----------CUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 1463 | 0.66 | 0.973653 |
Target: 5'- -aGCCGGACGAUCc--GGcgGCCGGCc -3' miRNA: 3'- gcUGGUUUGCUAGcuaCUugUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 2007 | 0.66 | 0.970607 |
Target: 5'- gCGGCCAugcuggcgaacGACGAauaUGGUGAGCcgcaggggACUGGCg -3' miRNA: 3'- -GCUGGU-----------UUGCUa--GCUACUUG--------UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 2578 | 0.77 | 0.492078 |
Target: 5'- uCGACCAAAUucUCGAUGGcaucGCACUGGUu -3' miRNA: 3'- -GCUGGUUUGcuAGCUACU----UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 3237 | 0.75 | 0.590099 |
Target: 5'- cCGGCCGcuCGAUCGAUGAcuucaacccgcGCAugaUCGGCu -3' miRNA: 3'- -GCUGGUuuGCUAGCUACU-----------UGU---GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 3333 | 0.71 | 0.786844 |
Target: 5'- cCGAUCAuGCGcggguugaagucAUCGAUcGAGCGgCCGGCg -3' miRNA: 3'- -GCUGGUuUGC------------UAGCUA-CUUGU-GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 3486 | 0.69 | 0.898276 |
Target: 5'- uCGACCAGAUGGUCGucucgu-UCGGCu -3' miRNA: 3'- -GCUGGUUUGCUAGCuacuuguGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 3558 | 0.71 | 0.816237 |
Target: 5'- aCGACCAucUGGUCGAUGu-CGCCGucuGCc -3' miRNA: 3'- -GCUGGUuuGCUAGCUACuuGUGGC---CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 5324 | 0.66 | 0.959968 |
Target: 5'- uCGGCCGAACGccugaaCGAauUGAacgccucgaaGCACCGGa -3' miRNA: 3'- -GCUGGUUUGCua----GCU--ACU----------UGUGGCCg -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 6587 | 0.68 | 0.92561 |
Target: 5'- aGACaucGCGAagUCGAUGAucgcuCGCgCGGCg -3' miRNA: 3'- gCUGguuUGCU--AGCUACUu----GUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 6715 | 0.77 | 0.471267 |
Target: 5'- aCGAgCGcGCGcUCGGgcaUGAACGCCGGCa -3' miRNA: 3'- -GCUgGUuUGCuAGCU---ACUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 7753 | 0.66 | 0.959968 |
Target: 5'- aGuACCAGuacaaGAUCGA-GAACAUCGaGCg -3' miRNA: 3'- gC-UGGUUug---CUAGCUaCUUGUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 8116 | 0.7 | 0.825646 |
Target: 5'- gCGAcCCAGugGG-CGAagGAGC-CCGGCa -3' miRNA: 3'- -GCU-GGUUugCUaGCUa-CUUGuGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 8632 | 0.67 | 0.951555 |
Target: 5'- gGAuUCAGGCGAUC-AUGcAC-CCGGCa -3' miRNA: 3'- gCU-GGUUUGCUAGcUACuUGuGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 8930 | 0.66 | 0.963403 |
Target: 5'- gCGGCCGagcaccugaaaaaGACGcUCGAaGAACGCaaaCGGCc -3' miRNA: 3'- -GCUGGU-------------UUGCuAGCUaCUUGUG---GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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