Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 31572 | 1.14 | 0.002448 |
Target: 5'- uCGACCAAACGAUCGAUGAACACCGGCg -3' miRNA: 3'- -GCUGGUUUGCUAGCUACUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 52678 | 0.79 | 0.374683 |
Target: 5'- aCGACCAGACGggCGcgc-ACGCCGGCc -3' miRNA: 3'- -GCUGGUUUGCuaGCuacuUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 9775 | 0.79 | 0.392911 |
Target: 5'- gCGGCUGAAggccCGGUCGAUGAGuCGCUGGCc -3' miRNA: 3'- -GCUGGUUU----GCUAGCUACUU-GUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39856 | 0.78 | 0.42131 |
Target: 5'- gGACCAAACGAaCGAuUGGGCGaaGGCa -3' miRNA: 3'- gCUGGUUUGCUaGCU-ACUUGUggCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 25157 | 0.77 | 0.471267 |
Target: 5'- uGGCCGc-CGAUCGGuUGAACGCCGcGCu -3' miRNA: 3'- gCUGGUuuGCUAGCU-ACUUGUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 6715 | 0.77 | 0.471267 |
Target: 5'- aCGAgCGcGCGcUCGGgcaUGAACGCCGGCa -3' miRNA: 3'- -GCUgGUuUGCuAGCU---ACUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 2578 | 0.77 | 0.492078 |
Target: 5'- uCGACCAAAUucUCGAUGGcaucGCACUGGUu -3' miRNA: 3'- -GCUGGUUUGcuAGCUACU----UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 18799 | 0.76 | 0.54581 |
Target: 5'- aGACCAucaaGG-CGAUGAAC-CCGGCg -3' miRNA: 3'- gCUGGUuug-CUaGCUACUUGuGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 57788 | 0.76 | 0.54581 |
Target: 5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3' miRNA: 3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 394 | 0.76 | 0.54581 |
Target: 5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3' miRNA: 3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 25093 | 0.75 | 0.567846 |
Target: 5'- gCGGCCAcggaGGCGGUCGccaucGAcGCGCCGGCu -3' miRNA: 3'- -GCUGGU----UUGCUAGCua---CU-UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 29477 | 0.75 | 0.57895 |
Target: 5'- gCGaACCGGGCGAgCGAcguaGGACGCUGGCg -3' miRNA: 3'- -GC-UGGUUUGCUaGCUa---CUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 3237 | 0.75 | 0.590099 |
Target: 5'- cCGGCCGcuCGAUCGAUGAcuucaacccgcGCAugaUCGGCu -3' miRNA: 3'- -GCUGGUuuGCUAGCUACU-----------UGU---GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 9370 | 0.74 | 0.63497 |
Target: 5'- aCGGCCAGcCGGUCGgcGGcCAgCGGCg -3' miRNA: 3'- -GCUGGUUuGCUAGCuaCUuGUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 10048 | 0.74 | 0.63497 |
Target: 5'- uGACCGGACGAggaUCGAgccgGGGCcguaauacuGCCGGUg -3' miRNA: 3'- gCUGGUUUGCU---AGCUa---CUUG---------UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 18160 | 0.72 | 0.741094 |
Target: 5'- gCGGCCcGGCGAUCGAgcgUGAGCGugaaccgcuucaaCGGCg -3' miRNA: 3'- -GCUGGuUUGCUAGCU---ACUUGUg------------GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31204 | 0.72 | 0.745361 |
Target: 5'- -uGCCGccGAUGAUCGGcUGcuCGCCGGCa -3' miRNA: 3'- gcUGGU--UUGCUAGCU-ACuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 44142 | 0.72 | 0.745361 |
Target: 5'- cCGAgCAGAUGAUCGggGcguAUGCCGGUc -3' miRNA: 3'- -GCUgGUUUGCUAGCuaCu--UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 32010 | 0.72 | 0.745361 |
Target: 5'- aGAagaAAAUGAUCGAucgUGAucuCGCCGGCa -3' miRNA: 3'- gCUgg-UUUGCUAGCU---ACUu--GUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 15683 | 0.71 | 0.776695 |
Target: 5'- gGACCAAACG-UCGuguuuUGAGCcgaACCGGa -3' miRNA: 3'- gCUGGUUUGCuAGCu----ACUUG---UGGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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