miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 394 0.76 0.54581
Target:  5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3'
miRNA:   3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 446 0.66 0.973653
Target:  5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3'
miRNA:   3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5'
22701 3' -49.6 NC_005091.1 + 657 0.7 0.822846
Target:  5'- uCGACCGGGC-AUCGcgGAaaucuacgcggacuGCGCCGcGCg -3'
miRNA:   3'- -GCUGGUUUGcUAGCuaCU--------------UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 990 0.7 0.861063
Target:  5'- gCGugCGAGCaGGUCgcaauGAUGAucGCGCCGGg -3'
miRNA:   3'- -GCugGUUUG-CUAG-----CUACU--UGUGGCCg -5'
22701 3' -49.6 NC_005091.1 + 1207 0.69 0.884282
Target:  5'- cCGGCCAuccCGAccaUGAUGAACauggacuuccucgGCCGGCu -3'
miRNA:   3'- -GCUGGUuu-GCUa--GCUACUUG-------------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 1251 0.71 0.816237
Target:  5'- gGGCCGGAUG-UCGGaaggcuggggcGAAUACCGGCa -3'
miRNA:   3'- gCUGGUUUGCuAGCUa----------CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 1463 0.66 0.973653
Target:  5'- -aGCCGGACGAUCc--GGcgGCCGGCc -3'
miRNA:   3'- gcUGGUUUGCUAGcuaCUugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 2007 0.66 0.970607
Target:  5'- gCGGCCAugcuggcgaacGACGAauaUGGUGAGCcgcaggggACUGGCg -3'
miRNA:   3'- -GCUGGU-----------UUGCUa--GCUACUUG--------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 2578 0.77 0.492078
Target:  5'- uCGACCAAAUucUCGAUGGcaucGCACUGGUu -3'
miRNA:   3'- -GCUGGUUUGcuAGCUACU----UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3237 0.75 0.590099
Target:  5'- cCGGCCGcuCGAUCGAUGAcuucaacccgcGCAugaUCGGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGCUACU-----------UGU---GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3333 0.71 0.786844
Target:  5'- cCGAUCAuGCGcggguugaagucAUCGAUcGAGCGgCCGGCg -3'
miRNA:   3'- -GCUGGUuUGC------------UAGCUA-CUUGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3486 0.69 0.898276
Target:  5'- uCGACCAGAUGGUCGucucgu-UCGGCu -3'
miRNA:   3'- -GCUGGUUUGCUAGCuacuuguGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3558 0.71 0.816237
Target:  5'- aCGACCAucUGGUCGAUGu-CGCCGucuGCc -3'
miRNA:   3'- -GCUGGUuuGCUAGCUACuuGUGGC---CG- -5'
22701 3' -49.6 NC_005091.1 + 5324 0.66 0.959968
Target:  5'- uCGGCCGAACGccugaaCGAauUGAacgccucgaaGCACCGGa -3'
miRNA:   3'- -GCUGGUUUGCua----GCU--ACU----------UGUGGCCg -5'
22701 3' -49.6 NC_005091.1 + 6587 0.68 0.92561
Target:  5'- aGACaucGCGAagUCGAUGAucgcuCGCgCGGCg -3'
miRNA:   3'- gCUGguuUGCU--AGCUACUu----GUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 6715 0.77 0.471267
Target:  5'- aCGAgCGcGCGcUCGGgcaUGAACGCCGGCa -3'
miRNA:   3'- -GCUgGUuUGCuAGCU---ACUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 7753 0.66 0.959968
Target:  5'- aGuACCAGuacaaGAUCGA-GAACAUCGaGCg -3'
miRNA:   3'- gC-UGGUUug---CUAGCUaCUUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 8116 0.7 0.825646
Target:  5'- gCGAcCCAGugGG-CGAagGAGC-CCGGCa -3'
miRNA:   3'- -GCU-GGUUugCUaGCUa-CUUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 8632 0.67 0.951555
Target:  5'- gGAuUCAGGCGAUC-AUGcAC-CCGGCa -3'
miRNA:   3'- gCU-GGUUUGCUAGcUACuUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 8930 0.66 0.963403
Target:  5'- gCGGCCGagcaccugaaaaaGACGcUCGAaGAACGCaaaCGGCc -3'
miRNA:   3'- -GCUGGU-------------UUGCuAGCUaCUUGUG---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.