miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 3' -59.8 NC_005091.1 + 41643 1.07 0.000481
Target:  5'- gUACGCACGCGCCAUCGUGCAGCGCCAg -3'
miRNA:   3'- -AUGCGUGCGCGGUAGCACGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 48810 0.75 0.106429
Target:  5'- aACGCAUG-GCCGuaucuccgugucgcUCGUGCAGUGCCGc -3'
miRNA:   3'- aUGCGUGCgCGGU--------------AGCACGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 50817 0.73 0.157412
Target:  5'- aGCGUGCG-GCCGUCGUGC-GCGCg- -3'
miRNA:   3'- aUGCGUGCgCGGUAGCACGuCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 6516 0.71 0.205276
Target:  5'- cGCGCACGCuGCCcUCG-GgAGCGUCGa -3'
miRNA:   3'- aUGCGUGCG-CGGuAGCaCgUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 27709 0.71 0.215129
Target:  5'- -cCGCACGCgcagggucucuucGCCGaccgggaUCGUGguGCGCCGu -3'
miRNA:   3'- auGCGUGCG-------------CGGU-------AGCACguCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 8948 0.71 0.216248
Target:  5'- gGCGUACGaCGuUCAUCGccagcgcaGCAGCGCCAa -3'
miRNA:   3'- aUGCGUGC-GC-GGUAGCa-------CGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 36506 0.71 0.227719
Target:  5'- gUGCGCAUggaaGCGCCGUgcUGCGGCgGCCGg -3'
miRNA:   3'- -AUGCGUG----CGCGGUAgcACGUCG-CGGU- -5'
22716 3' -59.8 NC_005091.1 + 10254 0.7 0.252204
Target:  5'- cGCGCaggcaggacACGCGCaCAUCaggaaGUGCGGCGCUc -3'
miRNA:   3'- aUGCG---------UGCGCG-GUAG-----CACGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 23393 0.7 0.252204
Target:  5'- gACGCA-GCGCCGcCGaacagaccgaGCAGCGCCAu -3'
miRNA:   3'- aUGCGUgCGCGGUaGCa---------CGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 22840 0.69 0.278816
Target:  5'- aGCGCACGCGCCugaacGCcGCGCUg -3'
miRNA:   3'- aUGCGUGCGCGGuagcaCGuCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 39601 0.69 0.281597
Target:  5'- aACGUACGCGCCGugucgacgcaucucgUCGUGCuuguuguacuGGUGUCGc -3'
miRNA:   3'- aUGCGUGCGCGGU---------------AGCACG----------UCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 23523 0.69 0.285809
Target:  5'- aUGCGUccgaccauuucuGCGUGCCAUCGgcgGCAGCGa-- -3'
miRNA:   3'- -AUGCG------------UGCGCGGUAGCa--CGUCGCggu -5'
22716 3' -59.8 NC_005091.1 + 14649 0.69 0.285809
Target:  5'- -uUGUACGCGCCGUUGuUGUAGCucgucguaucgGCCGg -3'
miRNA:   3'- auGCGUGCGCGGUAGC-ACGUCG-----------CGGU- -5'
22716 3' -59.8 NC_005091.1 + 943 0.69 0.307616
Target:  5'- cGCGUACGacccggaaGCCGUCGUGCcggaacccGCGCUg -3'
miRNA:   3'- aUGCGUGCg-------CGGUAGCACGu-------CGCGGu -5'
22716 3' -59.8 NC_005091.1 + 44195 0.69 0.307616
Target:  5'- gUGCGCGacaGUGCCGUa-UGCGGCGUCu -3'
miRNA:   3'- -AUGCGUg--CGCGGUAgcACGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 36882 0.69 0.315163
Target:  5'- cGCGCgaGCGCGCCAUCauc--GCGCCGa -3'
miRNA:   3'- aUGCG--UGCGCGGUAGcacguCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 46269 0.69 0.315163
Target:  5'- cGCGCuCGUgGCCGUCGUacuggugaaaCAGCGCCAu -3'
miRNA:   3'- aUGCGuGCG-CGGUAGCAc---------GUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 52638 0.68 0.322848
Target:  5'- gUGCGU-CGCGCCGauccCGUGU-GCGCCAu -3'
miRNA:   3'- -AUGCGuGCGCGGUa---GCACGuCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 55994 0.68 0.322848
Target:  5'- cUGCGCACGCaGuUgGUCGgccUGCuGCGCCAu -3'
miRNA:   3'- -AUGCGUGCG-C-GgUAGC---ACGuCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 31626 0.68 0.330673
Target:  5'- -cCGCACGC-UCGUCGcUGUaacgAGCGCCAg -3'
miRNA:   3'- auGCGUGCGcGGUAGC-ACG----UCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.