miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 3' -59.8 NC_005091.1 + 407 0.68 0.354977
Target:  5'- --aGCACGCGgaCGaucUCGUGCAG-GCCAu -3'
miRNA:   3'- augCGUGCGCg-GU---AGCACGUCgCGGU- -5'
22716 3' -59.8 NC_005091.1 + 943 0.69 0.307616
Target:  5'- cGCGUACGacccggaaGCCGUCGUGCcggaacccGCGCUg -3'
miRNA:   3'- aUGCGUGCg-------CGGUAGCACGu-------CGCGGu -5'
22716 3' -59.8 NC_005091.1 + 6516 0.71 0.205276
Target:  5'- cGCGCACGCuGCCcUCG-GgAGCGUCGa -3'
miRNA:   3'- aUGCGUGCG-CGGuAGCaCgUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 8507 0.66 0.473956
Target:  5'- gGCGCACGCGUucgagCAUCcgggcUGCGGC-CCGg -3'
miRNA:   3'- aUGCGUGCGCG-----GUAGc----ACGUCGcGGU- -5'
22716 3' -59.8 NC_005091.1 + 8948 0.71 0.216248
Target:  5'- gGCGUACGaCGuUCAUCGccagcgcaGCAGCGCCAa -3'
miRNA:   3'- aUGCGUGC-GC-GGUAGCa-------CGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 10254 0.7 0.252204
Target:  5'- cGCGCaggcaggacACGCGCaCAUCaggaaGUGCGGCGCUc -3'
miRNA:   3'- aUGCG---------UGCGCG-GUAG-----CACGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 10907 0.68 0.363353
Target:  5'- cGCGUACGgGUCGUCGcugccgagUGCAaugcGCGCCu -3'
miRNA:   3'- aUGCGUGCgCGGUAGC--------ACGU----CGCGGu -5'
22716 3' -59.8 NC_005091.1 + 11419 0.67 0.416417
Target:  5'- gACGCACauGCGCaGUCGaacGCGGCaGCCGc -3'
miRNA:   3'- aUGCGUG--CGCGgUAGCa--CGUCG-CGGU- -5'
22716 3' -59.8 NC_005091.1 + 14649 0.69 0.285809
Target:  5'- -uUGUACGCGCCGUUGuUGUAGCucgucguaucgGCCGg -3'
miRNA:   3'- auGCGUGCGCGGUAGC-ACGUCG-----------CGGU- -5'
22716 3' -59.8 NC_005091.1 + 16577 0.66 0.464083
Target:  5'- gUGCGUACcccaCGCCGUCGcucGguGCGUCGg -3'
miRNA:   3'- -AUGCGUGc---GCGGUAGCa--CguCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 17913 0.67 0.407247
Target:  5'- cACGaUACGuCGCCucgGUCGUGCGGUagacgGCCGg -3'
miRNA:   3'- aUGC-GUGC-GCGG---UAGCACGUCG-----CGGU- -5'
22716 3' -59.8 NC_005091.1 + 21193 0.66 0.454318
Target:  5'- aACGCucgACGCGCUcgugAUCGauucuagaauUGCAGCGCa- -3'
miRNA:   3'- aUGCG---UGCGCGG----UAGC----------ACGUCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 22840 0.69 0.278816
Target:  5'- aGCGCACGCGCCugaacGCcGCGCUg -3'
miRNA:   3'- aUGCGUGCGCGGuagcaCGuCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 23393 0.7 0.252204
Target:  5'- gACGCA-GCGCCGcCGaacagaccgaGCAGCGCCAu -3'
miRNA:   3'- aUGCGUgCGCGGUaGCa---------CGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 23497 0.67 0.371865
Target:  5'- gACGCGCGCGgCGauggcgcugcUCGgucuguucgGCGGCGCUg -3'
miRNA:   3'- aUGCGUGCGCgGU----------AGCa--------CGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 23523 0.69 0.285809
Target:  5'- aUGCGUccgaccauuucuGCGUGCCAUCGgcgGCAGCGa-- -3'
miRNA:   3'- -AUGCG------------UGCGCGGUAGCa--CGUCGCggu -5'
22716 3' -59.8 NC_005091.1 + 26437 0.68 0.354146
Target:  5'- cGCGCGCGggccgccggggcUGCCAUCGUaGCGGCcgggcgcgagcagGCCGc -3'
miRNA:   3'- aUGCGUGC------------GCGGUAGCA-CGUCG-------------CGGU- -5'
22716 3' -59.8 NC_005091.1 + 27709 0.71 0.215129
Target:  5'- -cCGCACGCgcagggucucuucGCCGaccgggaUCGUGguGCGCCGu -3'
miRNA:   3'- auGCGUGCG-------------CGGU-------AGCACguCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 29270 0.67 0.371865
Target:  5'- gACaGCuucguCGCGCCAUccgucgCGUGCAGCGUUu -3'
miRNA:   3'- aUG-CGu----GCGCGGUA------GCACGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 31626 0.68 0.330673
Target:  5'- -cCGCACGC-UCGUCGcUGUaacgAGCGCCAg -3'
miRNA:   3'- auGCGUGCGcGGUAGC-ACG----UCGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.