miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 5' -54.6 NC_005091.1 + 41691 1.06 0.002068
Target:  5'- cUUCAGCACACGACGCGUCAUCACGCGc -3'
miRNA:   3'- -AAGUCGUGUGCUGCGCAGUAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 47086 0.66 0.75962
Target:  5'- cUUCAGCgACAUGAUggGCGUCAUC-CuCGg -3'
miRNA:   3'- -AAGUCG-UGUGCUG--CGCAGUAGuGcGC- -5'
22716 5' -54.6 NC_005091.1 + 51755 0.66 0.749237
Target:  5'- cUUCAGCACuuCG-CGCGaC-UCGCGCa -3'
miRNA:   3'- -AAGUCGUGu-GCuGCGCaGuAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 41636 0.66 0.738733
Target:  5'- -aCAGCAUguACGcACGCGcCAUCGUGCa -3'
miRNA:   3'- aaGUCGUG--UGC-UGCGCaGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 28936 0.66 0.72812
Target:  5'- gUCGGCACGaggccgUGAuCGgGUCGUUGCGCu -3'
miRNA:   3'- aAGUCGUGU------GCU-GCgCAGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 28137 0.67 0.71741
Target:  5'- uUUCGGCcgGCGugGCGUCcGUCGucuuCGCGu -3'
miRNA:   3'- -AAGUCGugUGCugCGCAG-UAGU----GCGC- -5'
22716 5' -54.6 NC_005091.1 + 26658 0.67 0.706615
Target:  5'- gUCGGCgGCcCGGCGUugagcgCAUCACGCGc -3'
miRNA:   3'- aAGUCG-UGuGCUGCGca----GUAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 49225 0.67 0.695746
Target:  5'- gUCAGCACGCGAUGgG-CugcUUugGCa -3'
miRNA:   3'- aAGUCGUGUGCUGCgCaGu--AGugCGc -5'
22716 5' -54.6 NC_005091.1 + 52786 0.67 0.662809
Target:  5'- aUCAGgGaCGCGGCgGCGaUCAggccgCACGCGg -3'
miRNA:   3'- aAGUCgU-GUGCUG-CGC-AGUa----GUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 54028 0.68 0.651757
Target:  5'- -cCAGCGCgACGGCGCacGUUuUCACGUa -3'
miRNA:   3'- aaGUCGUG-UGCUGCG--CAGuAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 54251 0.68 0.618535
Target:  5'- -gUAGCACgACGggcaaaACGCGUUgccgAUCGCGCGg -3'
miRNA:   3'- aaGUCGUG-UGC------UGCGCAG----UAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 36874 0.72 0.400732
Target:  5'- gUCGGUgucGCGCGAgCGCGccaUCAUCGCGCc -3'
miRNA:   3'- aAGUCG---UGUGCU-GCGC---AGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 36453 0.72 0.419482
Target:  5'- aUCGGCGCACGAUacaGCGUCG-C-CGCa -3'
miRNA:   3'- aAGUCGUGUGCUG---CGCAGUaGuGCGc -5'
22716 5' -54.6 NC_005091.1 + 1988 0.7 0.499417
Target:  5'- -aCAcGCACACGACGCuGUCGcggccaugCugGCGa -3'
miRNA:   3'- aaGU-CGUGUGCUGCG-CAGUa-------GugCGC- -5'
22716 5' -54.6 NC_005091.1 + 16246 0.7 0.499417
Target:  5'- -cCGGCAUGCGAUGCGcCGcUCGCGaCGa -3'
miRNA:   3'- aaGUCGUGUGCUGCGCaGU-AGUGC-GC- -5'
22716 5' -54.6 NC_005091.1 + 51884 0.7 0.499417
Target:  5'- aUCGGCAaACGACGC-UCGUCguaacccaucagGCGCGg -3'
miRNA:   3'- aAGUCGUgUGCUGCGcAGUAG------------UGCGC- -5'
22716 5' -54.6 NC_005091.1 + 49271 0.69 0.552656
Target:  5'- -gCAGcCACACGAgGCGcaguUCGUCGgGCGu -3'
miRNA:   3'- aaGUC-GUGUGCUgCGC----AGUAGUgCGC- -5'
22716 5' -54.6 NC_005091.1 + 31839 0.69 0.552656
Target:  5'- -gCAGC-CACGuucgccCGCGUCGUCACGa- -3'
miRNA:   3'- aaGUCGuGUGCu-----GCGCAGUAGUGCgc -5'
22716 5' -54.6 NC_005091.1 + 3124 0.75 0.257536
Target:  5'- gUCAGCACGCGAauCGCGUUcUCGCucuGCGg -3'
miRNA:   3'- aAGUCGUGUGCU--GCGCAGuAGUG---CGC- -5'
22716 5' -54.6 NC_005091.1 + 26134 0.66 0.769872
Target:  5'- aUCAGCgcguGCGCGGCGagcUgAUCGCGCu -3'
miRNA:   3'- aAGUCG----UGUGCUGCgc-AgUAGUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.