miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 5' -54.6 NC_005091.1 + 1988 0.7 0.499417
Target:  5'- -aCAcGCACACGACGCuGUCGcggccaugCugGCGa -3'
miRNA:   3'- aaGU-CGUGUGCUGCG-CAGUa-------GugCGC- -5'
22716 5' -54.6 NC_005091.1 + 2385 0.68 0.651757
Target:  5'- cUUCGGCGucguCGCGAUGCGUCGUgGCu-- -3'
miRNA:   3'- -AAGUCGU----GUGCUGCGCAGUAgUGcgc -5'
22716 5' -54.6 NC_005091.1 + 2422 0.66 0.769872
Target:  5'- aUCuGGCGCACGAC-CGUCuugauggcauUCAgGCGa -3'
miRNA:   3'- aAG-UCGUGUGCUGcGCAGu---------AGUgCGC- -5'
22716 5' -54.6 NC_005091.1 + 3124 0.75 0.257536
Target:  5'- gUCAGCACGCGAauCGCGUUcUCGCucuGCGg -3'
miRNA:   3'- aAGUCGUGUGCU--GCGCAGuAGUG---CGC- -5'
22716 5' -54.6 NC_005091.1 + 5086 0.72 0.419482
Target:  5'- -gCGGCGCAgGACGCGaUCGaaugcuUCGCGCu -3'
miRNA:   3'- aaGUCGUGUgCUGCGC-AGU------AGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 10216 0.67 0.694655
Target:  5'- cUCGGCGCGugcCGGCGUaacguccGUC-UCGCGCGc -3'
miRNA:   3'- aAGUCGUGU---GCUGCG-------CAGuAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 11820 0.68 0.607471
Target:  5'- cUUCGGCugACGGacuuCGCGgagAUCGCGCa -3'
miRNA:   3'- -AAGUCGugUGCU----GCGCag-UAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 12448 0.66 0.769872
Target:  5'- gUC-GCACugGcCGCGcUCGUCGCGg- -3'
miRNA:   3'- aAGuCGUGugCuGCGC-AGUAGUGCgc -5'
22716 5' -54.6 NC_005091.1 + 14100 0.67 0.706615
Target:  5'- -cCAGUACACGGCGgauaUGUgG-CGCGCGa -3'
miRNA:   3'- aaGUCGUGUGCUGC----GCAgUaGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 16246 0.7 0.499417
Target:  5'- -cCGGCAUGCGAUGCGcCGcUCGCGaCGa -3'
miRNA:   3'- aaGUCGUGUGCUGCGCaGU-AGUGC-GC- -5'
22716 5' -54.6 NC_005091.1 + 17478 0.68 0.607471
Target:  5'- -gCAGCGC-CGACGagcacaaucgaGaUCGUCGCGCGg -3'
miRNA:   3'- aaGUCGUGuGCUGCg----------C-AGUAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 20340 0.68 0.62961
Target:  5'- --aAGCG-GCGACGCGUCGgccgauucgaUCACGCu -3'
miRNA:   3'- aagUCGUgUGCUGCGCAGU----------AGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 23539 0.67 0.71741
Target:  5'- gUUCcuGCGCcagaugGCGA-GCGUCAUCAUGCa -3'
miRNA:   3'- -AAGu-CGUG------UGCUgCGCAGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 24412 0.66 0.738733
Target:  5'- aUCGGCgGCACGACG-GUCGacggccagccuaUCGcCGCGa -3'
miRNA:   3'- aAGUCG-UGUGCUGCgCAGU------------AGU-GCGC- -5'
22716 5' -54.6 NC_005091.1 + 26134 0.66 0.769872
Target:  5'- aUCAGCgcguGCGCGGCGagcUgAUCGCGCu -3'
miRNA:   3'- aAGUCG----UGUGCUGCgc-AgUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 26658 0.67 0.706615
Target:  5'- gUCGGCgGCcCGGCGUugagcgCAUCACGCGc -3'
miRNA:   3'- aAGUCG-UGuGCUGCGca----GUAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 28137 0.67 0.71741
Target:  5'- uUUCGGCcgGCGugGCGUCcGUCGucuuCGCGu -3'
miRNA:   3'- -AAGUCGugUGCugCGCAG-UAGU----GCGC- -5'
22716 5' -54.6 NC_005091.1 + 28936 0.66 0.72812
Target:  5'- gUCGGCACGaggccgUGAuCGgGUCGUUGCGCu -3'
miRNA:   3'- aAGUCGUGU------GCU-GCgCAGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 29574 0.66 0.72812
Target:  5'- aUCGGCGCGCGccaGCGUCcuacGUCGCuCGc -3'
miRNA:   3'- aAGUCGUGUGCug-CGCAG----UAGUGcGC- -5'
22716 5' -54.6 NC_005091.1 + 31839 0.69 0.552656
Target:  5'- -gCAGC-CACGuucgccCGCGUCGUCACGa- -3'
miRNA:   3'- aaGUCGuGUGCu-----GCGCAGUAGUGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.